RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SMSP52788 366 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 NRG3P56975 720 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 MRPS35P82673 323 aaKnown RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 C2orf80Q0P641 193 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 DUSP8Q13202 625 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 HEPACAMQ14CZ8 416 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 NTRK2Q16620 822 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 SP5Q6BEB4 398 aaPredicted RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 ARHGAP11AQ6P4F7 1023 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 GALNT18Q6P9A2 607 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 FAM109AQ8N4B1 249 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 OR52R1Q8NGF1 315 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 DIO2Q92813 273 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 KAT2AQ92830 837 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 CAVIN3Q969G5 261 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 C11orf24Q96F05 449 aaPredicted RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 FAM111AQ96PZ2 611 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 ITPAQ9BY32 194 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 PARD6BQ9BYG5 372 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 ROPN1BQ9BZX4 212 aaPredicted RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 NXF5Q9H1B4 397 aaKnown RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 ZDHHC11Q9H8X9 412 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 ANKRA2Q9H9E1 313 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 ROPN1Q9HAT0 212 aaPredicted RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 PROK2Q9HC23 129 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 RRAGDQ9NQL2 400 aaPredicted RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 PLSCR2Q9NRY7 297 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 GIMAP4Q9NUV9 329 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 MKS1Q9NXB0 559 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 CNIH4Q9P003 139 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 LGALS13Q9UHV8 139 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 ZNF639Q9UID6 485 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 CNOT11Q9UKZ1 510 aaKnown RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 POLR3HQ9Y535 204 aaPredicted RBP14.41□□□□□ -0.1
VPS39-203ENST00000561797 HRH3Q9Y5N1 445 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 LIPGQ9Y5X9 500 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 NPIPA2E9PIF3 369 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 NPIPA3F8WFD2 350 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 ADAM10O14672 748 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 TP53I11O14683 189 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 CBX7O95931 251 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 ZNF763Q0D2J5 394 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 ART3Q13508 389 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 SLC10A1Q14973 349 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 XKRXQ6PP77 449 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 TRIM46Q7Z4K8 759 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 OR9A2Q8NGT5 310 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 CTHRC1Q96CG8 243 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 DOHHQ9BU89 302 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 MECRQ9BV79 373 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 LDAHQ9H6V9 325 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 EXO5Q9H790 373 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 SLC35C2Q9NQQ7 365 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 SIRT5Q9NXA8 310 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 BOKQ9UMX3 212 aaPredicted RBP14.4□□□□□ -0.1
VPS39-203ENST00000561797 ENTPD4Q9Y227 616 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 CFL2Q9Y281 166 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 PTGDR2Q9Y5Y4 395 aa14.4□□□□□ -0.1
VPS39-203ENST00000561797 E9PLN8 166 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 AZIN1O14977 448 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 SEC22BO75396 215 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 RFPL3SP0C7P2 107 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 CREB1P16220 341 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 ABCD3P28288 659 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 GRNP28799 593 aaKnown RBP14.39□□□□□ -0.11
VPS39-203ENST00000561797 TMED10P49755 219 aaKnown RBP14.39□□□□□ -0.11
VPS39-203ENST00000561797 RPS6KA2Q15349 733 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 PRSS53Q2L4Q9 553 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 HYAL4Q2M3T9 481 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 ZNF628Q5EBL2 1059 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 BICRALQ6AI39 1079 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 TRILQ7L0X0 811 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 EID3Q8N140 333 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 OR5M9Q8NGP3 310 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 SPPL2AQ8TCT8 520 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 TCP10LQ8TDR4 215 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 LCORQ96JN0 433 aaPredicted RBP14.39□□□□□ -0.11
VPS39-203ENST00000561797 BBS4Q96RK4 519 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 SMC6Q96SB8 1091 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 DMRTA2Q96SC8 542 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 VKORC1Q9BQB6 163 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 ZFP64Q9NPA5 681 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 RYDENQ9NUL5 291 aaKnown RBP14.39□□□□□ -0.11
VPS39-203ENST00000561797 TNFRSF10DQ9UBN6 386 aa14.39□□□□□ -0.11
VPS39-203ENST00000561797 HCFC1P51610 2035 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 ESPNB1AK53 854 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 SLC28A1O00337 649 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 NME6O75414 186 aaPredicted RBP14.38□□□□□ -0.11
VPS39-203ENST00000561797 RSL1D1O76021 490 aaKnown RBP14.38□□□□□ -0.11
VPS39-203ENST00000561797 IGHG3P01860 377 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 CHRNGP07510 517 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 DDCP20711 480 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 HTR1EP28566 365 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 GSTM5P46439 218 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 MAN2A2P49641 1150 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 EMDP50402 254 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 CDSNQ15517 529 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 TMEM198Q66K66 360 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 DESI1Q6ICB0 168 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 FAM71E1Q6IPT2 247 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms