RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DEFB107AQ8IZN7 70 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 PGAM4Q8N0Y7 254 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 CA13Q8N1Q1 262 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 FAM47BQ8NA70 645 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 RBM15BQ8NDT2 890 aaKnown RBP11.02□□□□□ -0.65
LDLR-212ENST00000560467 ST6GALNAC3Q8NDV1 305 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 TNIP2Q8NFZ5 429 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 OR51Q1Q8NH59 317 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 OR5P2Q8WZ92 322 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 TM9SF4Q92544 642 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 MARVELD3Q96A59 401 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 TBC1D20Q96BZ9 403 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 LRRC58Q96CX6 371 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 OR1F2PQ96R84 312 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 WDR77Q9BQA1 342 aaPredicted RBP11.02□□□□□ -0.65
LDLR-212ENST00000560467 THUMPD3Q9BV44 507 aaKnown RBP11.02□□□□□ -0.65
LDLR-212ENST00000560467 RAD21L1Q9H4I0 556 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 C3orf14Q9HBI5 128 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 NEUROD4Q9HD90 331 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 SPAG4Q9NPE6 437 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 SLC22A11Q9NSA0 550 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 ACSS1Q9NUB1 689 aaPredicted RBP11.02□□□□□ -0.65
LDLR-212ENST00000560467 TEX10Q9NXF1 929 aaPredicted RBP11.02□□□□□ -0.65
LDLR-212ENST00000560467 TAS2R9Q9NYW1 312 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 TAS2R1Q9NYW7 299 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 HCN3Q9P1Z3 774 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 TRPC4Q9UBN4 977 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 ZNF282Q9UDV7 671 aaPredicted RBP11.02□□□□□ -0.65
LDLR-212ENST00000560467 OSGIN2Q9Y236 505 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 OTOGQ6ZRI0 2925 aa11.02□□□□□ -0.65
LDLR-212ENST00000560467 GLOD5A6NK44 160 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 OR10H2O60403 315 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 DNAJA2O60884 412 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 CTNSO60931 367 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 SLITRK5O94991 958 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 KRT75O95678 551 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 GPR75O95800 540 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 IGHEP01854 428 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 POU3F2P20265 443 aaPredicted RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 CHI3L1P36222 383 aaPredicted RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 XKP51811 444 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 NCBP2P52298 156 aaKnown RBP eCLIP11.01□□□□□ -0.65
LDLR-212ENST00000560467 HNRNPFP52597 415 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 HNRNPH2P55795 449 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 HSD17B7P56937 341 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 OLR1P78380 273 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 SLC25A3Q00325 362 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 PLIN5Q00G26 463 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 SERTAD2Q14140 314 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 TLR1Q15399 786 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 NKAIN1Q4KMZ8 207 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 SAMD4BQ5PRF9 694 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 C18orf63Q68DL7 685 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 ANKRD26P1Q6NSI1 321 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 MRPL14Q6P1L8 145 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 ANGPTL8Q6UXH0 198 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 RINLQ6ZS11 566 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 GRHL3Q8TE85 626 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 RBM18Q96H35 190 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 PEX11GQ96HA9 241 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 C10orf90Q96M02 699 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 CCDC115Q96NT0 180 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 ECSITQ9BQ95 431 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 PELOQ9BRX2 385 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 THTPAQ9BU02 230 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 AICDAQ9GZX7 198 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 SYNPO2LQ9H987 977 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 MKKSQ9NPJ1 570 aaPredicted RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 ATP13A2Q9NQ11 1180 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 AGPAT4Q9NRZ5 378 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 KCMF1Q9P0J7 381 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 MRPS2Q9Y399 296 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 SNX8Q9Y5X2 465 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 DIDO1Q9BTC0 2240 aaKnown RBP11.01□□□□□ -0.65
LDLR-212ENST00000560467 CROCCQ5TZA2 2017 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 C2CD3Q4AC94 2353 aa11.01□□□□□ -0.65
LDLR-212ENST00000560467 TMEM247A6NEH6 219 aa11□□□□□ -0.65
LDLR-212ENST00000560467 FBP2O00757 339 aa11□□□□□ -0.65
LDLR-212ENST00000560467 PGRMC2O15173 223 aa11□□□□□ -0.65
LDLR-212ENST00000560467 FOXS1O43638 330 aa11□□□□□ -0.65
LDLR-212ENST00000560467 ZG16O60844 167 aa11□□□□□ -0.65
LDLR-212ENST00000560467 B4GALT2O60909 372 aa11□□□□□ -0.65
LDLR-212ENST00000560467 B3GALT4O96024 378 aa11□□□□□ -0.65
LDLR-212ENST00000560467 ABCB1P08183 1280 aaPredicted RBP11□□□□□ -0.65
LDLR-212ENST00000560467 PORP16435 677 aaPredicted RBP11□□□□□ -0.65
LDLR-212ENST00000560467 ELAVL4P26378 380 aaKnown RBP11□□□□□ -0.65
LDLR-212ENST00000560467 XCR1P46094 333 aa11□□□□□ -0.65
LDLR-212ENST00000560467 OR1D4P47884 311 aa11□□□□□ -0.65
LDLR-212ENST00000560467 SOX8P57073 446 aa11□□□□□ -0.65
LDLR-212ENST00000560467 NCALDP61601 193 aa11□□□□□ -0.65
LDLR-212ENST00000560467 PRR5P85299 388 aa11□□□□□ -0.65
LDLR-212ENST00000560467 TP53BP2Q13625 1128 aa11□□□□□ -0.65
LDLR-212ENST00000560467 MLC1Q15049 377 aa11□□□□□ -0.65
LDLR-212ENST00000560467 ANKRD46Q86W74 232 aa11□□□□□ -0.65
LDLR-212ENST00000560467 PDSS2Q86YH6 399 aa11□□□□□ -0.65
LDLR-212ENST00000560467 LRRC25Q8N386 305 aaPredicted RBP11□□□□□ -0.65
LDLR-212ENST00000560467 METTL27Q8N6F8 245 aaPredicted RBP11□□□□□ -0.65
LDLR-212ENST00000560467 AMER3Q8N944 861 aa11□□□□□ -0.65
LDLR-212ENST00000560467 OR5T3Q8NGG3 340 aa11□□□□□ -0.65
LDLR-212ENST00000560467 GTF2H4Q92759 462 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms