RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ISLR2Q6UXK2 745 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 SPATA21Q7Z572 469 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 RPS19BP1Q86WX3 136 aaKnown RBP20.19■□□□□ 0.82
SNX1-210ENST00000560260 BEST3Q8N1M1 668 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 OR2L13Q8N349 312 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 ZNF441Q8N8Z8 693 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 GLB1L3Q8NCI6 653 aaPredicted RBP20.19■□□□□ 0.82
SNX1-210ENST00000560260 PSMA8Q8TAA3 256 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 C9orf43Q8TAL5 461 aaPredicted RBP20.19■□□□□ 0.82
SNX1-210ENST00000560260 ERP27Q96DN0 273 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 MAGED4Q96JG8 741 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 ZBTB18Q99592 522 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 ITPAQ9BY32 194 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 WWTR1Q9GZV5 400 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 CXorf36Q9H7Y0 433 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 CSAG2Q9Y5P2 127 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 OR6C76A6NM76 312 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 RNASET2O00584 256 aaKnown RBP20.18■□□□□ 0.82
SNX1-210ENST00000560260 PRAMEF2O60811 474 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 SLITRK5O94991 958 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 PGRP06401 933 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 IFI6P09912 130 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 POLR2JP52435 117 aaKnown RBP20.18■□□□□ 0.82
SNX1-210ENST00000560260 HBA1P69905 142 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 TIGD2Q4W5G0 525 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 LGI4Q8N135 537 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 NATD1Q8N6N6 113 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 NUBPLQ8TB37 319 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 ZNF354BQ96LW1 612 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 GAL3ST4Q96RP7 486 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 SLC52A3Q9NQ40 469 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 ZNF71Q9NQZ8 489 aaPredicted RBP20.18■□□□□ 0.82
SNX1-210ENST00000560260 DDX18Q9NVP1 670 aaKnown RBP20.18■□□□□ 0.82
SNX1-210ENST00000560260 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.18■□□□□ 0.82
SNX1-210ENST00000560260 FAM120CQ9NX05 1096 aaKnown RBP20.18■□□□□ 0.82
SNX1-210ENST00000560260 C19orf53Q9UNZ5 99 aaPredicted RBP20.18■□□□□ 0.82
SNX1-210ENST00000560260 TRIM33Q9UPN9 1127 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 IGSF10Q6WRI0 2623 aa20.18■□□□□ 0.82
SNX1-210ENST00000560260 ZFYVE26Q68DK2 2539 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 ATRXP46100 2492 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 FAM234BA2RU67 622 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 ASPDHA6ND91 283 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 WWP2O00308 870 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 SNX3O60493 162 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 NADKO95544 446 aaPredicted RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 F10P00742 488 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 ABCB1P08183 1280 aaPredicted RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 MEP1AQ16819 746 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 ZNF468Q5VIY5 522 aaPredicted RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 ABHD17BQ5VST6 288 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 METTL21CQ5VZV1 264 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 SLC29A4Q7RTT9 530 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 ADIPOR1Q96A54 375 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 VPS33AQ96AX1 596 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 WBP1Q96G27 269 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 VSTM2LQ96N03 204 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 BBC3Q96PG8 261 aaPredicted RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 UBL7Q96S82 380 aaPredicted RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 NSRP1Q9H0G5 558 aaKnown RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 PLA2G3Q9NZ20 509 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 MYOTQ9UBF9 498 aa20.17■□□□□ 0.82
SNX1-210ENST00000560260 HEMK1Q9Y5R4 338 aaPredicted RBP20.17■□□□□ 0.82
SNX1-210ENST00000560260 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 PRSS51A0A1B0GVH4 220 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 SHOX2O60902 331 aaPredicted RBP20.16■□□□□ 0.82
SNX1-210ENST00000560260 WDPCPO95876 746 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 CAPN3P20807 821 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 GAB1Q13480 694 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 UBAP2LQ14157 1087 aaKnown RBP20.16■□□□□ 0.82
SNX1-210ENST00000560260 RCAN2Q14206 197 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 NNATQ16517 81 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 AGKQ53H12 422 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 LACTB2Q53H82 288 aaPredicted RBP20.16■□□□□ 0.82
SNX1-210ENST00000560260 ANXA8L1Q5VT79 327 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 GK5Q6ZS86 529 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 CPSF7Q8N684 471 aaKnown RBP20.16■□□□□ 0.82
SNX1-210ENST00000560260 FAM120BQ96EK7 910 aaKnown RBP20.16■□□□□ 0.82
SNX1-210ENST00000560260 GIMAP5Q96F15 307 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 CCDC115Q96NT0 180 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 OR52E6Q96RD3 313 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 RASL10BQ96S79 203 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 INPP5KQ9BT40 448 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 FOLH1BQ9HBA9 442 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 SERHLQ9NQF3 203 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 SAR1AQ9NR31 198 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 CCDC167Q9P0B6 97 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 NTMQ9P121 344 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 ADAM21Q9UKJ8 722 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 ZNF451Q9Y4E5 1061 aa20.16■□□□□ 0.82
SNX1-210ENST00000560260 C2orf92A0A1B0GVN3 265 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 NR5A2O00482 541 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 ITGA10O75578 1167 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 OR2J2O76002 312 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 CPSF4O95639 269 aaKnown RBP20.15■□□□□ 0.82
SNX1-210ENST00000560260 C1QCP02747 245 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 ALPPP05187 535 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 CDKN2CP42773 168 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 IRX1P78414 480 aaPredicted RBP20.15■□□□□ 0.82
SNX1-210ENST00000560260 BLOC1S3Q6QNY0 202 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 LYPD8Q6UX82 237 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms