RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RBBP5Q15291 538 aaKnown RBP11.66□□□□□ -0.54
SHMT2-230ENST00000557427 AP5B1Q2VPB7 878 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 VPS26BQ4G0F5 336 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 KRTCAP3Q53RY4 240 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 MFSD4BQ5TF39 518 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 PRSS41Q7RTY9 318 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 MARVELD2Q8N4S9 558 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 ARHGEF39Q8N4T4 335 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 ZNF740Q8NDX6 193 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 ABHD11Q8NFV4 315 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 OR4K1Q8NGD4 311 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 PYDC1Q8WXC3 89 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 DNAJC9Q8WXX5 260 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 NEIL2Q969S2 332 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 TM4SF19Q96DZ7 209 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 MVB12AQ96EY5 273 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 RSRC1Q96IZ7 334 aaKnown RBP11.66□□□□□ -0.54
SHMT2-230ENST00000557427 VKORC1Q9BQB6 163 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 RNF32Q9H0A6 362 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 ACTR8Q9H981 624 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 ANKHQ9HCJ1 492 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 MKKSQ9NPJ1 570 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-230ENST00000557427 DNAJC11Q9NVH1 559 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 DNAJB12Q9NXW2 375 aaKnown RBP11.66□□□□□ -0.54
SHMT2-230ENST00000557427 HCN3Q9P1Z3 774 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 KCNN3Q9UGI6 736 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 MCM8Q9UJA3 840 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 LEF1Q9UJU2 399 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-230ENST00000557427 PACSIN3Q9UKS6 424 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 MKL2Q9ULH7 1088 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 PLEKHA6Q9Y2H5 1048 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 RNF11Q9Y3C5 154 aa11.66□□□□□ -0.54
SHMT2-230ENST00000557427 ATRQ13535 2644 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 IGLV3-12A0A075B6K2 115 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 OR5H15A6NDH6 313 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 OR2W5A6NFC9 320 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 IDSB3KWA1 339 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 NPIPA5E9PKD4 350 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 FAM227AF5H4B4 570 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 FXYD1O00168 92 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 CASQ2O14958 399 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 ANKRD28O15084 1053 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 NDUFS4O43181 175 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 BAG2O95816 211 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 HOXD4P09016 255 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 ACPPP15309 386 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 ATP6V1C1P21283 382 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 JAK1P23458 1154 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 HNF4AP41235 474 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 NME5P56597 212 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 UFM1P61960 85 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 EEF1A2Q05639 463 aaKnown RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 PCDH1Q08174 1060 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 IL23RQ5VWK5 629 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 TMEM214Q6NUQ4 689 aaKnown RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 CYP20A1Q6UW02 462 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 NXPE4Q6UWF7 544 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 CLEC9AQ6UXN8 241 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 NDUFAF7Q7L592 441 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 SIAH3Q8IW03 269 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 TBC1D19Q8N5T2 526 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 BHLHE22Q8NFJ8 381 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 OR51Q1Q8NH59 317 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 LRRC58Q96CX6 371 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 DUS3LQ96G46 650 aaKnown RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 VPS50Q96JG6 964 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 C18orf12Q96KH6 178 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 ZNF570Q96NI8 536 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 ALPK1Q96QP1 1244 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 C1orf50Q9BV19 199 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 SPNS1Q9H2V7 528 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 VCX3BQ9H321 246 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 C6orf203Q9P0P8 240 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 ZNF490Q9ULM2 529 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 PPT2Q9UMR5 302 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 NPIPA1Q9UND3 350 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 SNX6Q9UNH7 406 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 EIF3LQ9Y262 564 aaKnown RBP11.65□□□□□ -0.54
SHMT2-230ENST00000557427 HRH3Q9Y5N1 445 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 KCNE2Q9Y6J6 123 aa11.65□□□□□ -0.54
SHMT2-230ENST00000557427 HRNRQ86YZ3 2850 aaPredicted RBP11.65□□□□□ -0.55
SHMT2-230ENST00000557427 C15orf38-AP3S2A0A0A6YYH1 394 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 NSG1A0A0A6YYJ2 146 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 ASPDHA6ND91 283 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 PRORSD1PA6NEY8 169 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 ZNF860A6NHJ4 632 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 CCDC154A6NI56 674 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 H0YIG0 161 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 DNAJB6O75190 326 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 CTAG2O75638 210 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 BMP10O95393 424 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 NSA2O95478 260 aaKnown RBP11.64□□□□□ -0.55
SHMT2-230ENST00000557427 B3GALT4O96024 378 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 C8BP07358 591 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 INHBBP09529 407 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 SLC35G6P0C7Q6 338 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 ITGAMP11215 1152 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 HSD17B1P14061 328 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 SLC7A2P52569 658 aa11.64□□□□□ -0.55
SHMT2-230ENST00000557427 MINDY4Q4G0A6 757 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms