RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RNF111Q6ZNA4 994 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 WDR53Q7Z5U6 358 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-227ENST00000557269 MTERF4Q7Z6M4 381 aaKnown RBP11.9□□□□□ -0.5
SHMT2-227ENST00000557269 RETREG3Q86VR2 466 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 SIRT6Q8N6T7 355 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 FDCSPQ8NFU4 85 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 OR7G1Q8NGA0 311 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 OR5AK3PQ8NH89 298 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 C16orf52Q8NHV5 167 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 BCAS4Q8TDM0 211 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 GTF2H4Q92759 462 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 FAM120BQ96EK7 910 aaKnown RBP11.9□□□□□ -0.5
SHMT2-227ENST00000557269 GIMAP5Q96F15 307 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 LHPPQ9H008 270 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 TAS2R9Q9NYW1 312 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 SLAMF8Q9P0V8 285 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 NTMQ9P121 344 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 COPS7AQ9UBW8 275 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 PTPRQQ9UMZ3 2332 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 SNX8Q9Y5X2 465 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 ZZEF1O43149 2961 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 LOC100653049A0A140TA62 436 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 A0A1W2PP18 115 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 K7EM74 188 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 FBP2O00757 339 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 NDUFAB1O14561 156 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF354AO60765 605 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 KRT34O76011 436 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 SNRPB2P08579 225 aaKnown RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 CCT3P49368 545 aaKnown RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 PRKAG1P54619 331 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 EBPQ15125 230 aaKnown RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 MAPKAPK3Q16644 382 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 C6orf163Q5TEZ5 329 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 TCTN3Q6NUS6 607 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 DNAJC14Q6Y2X3 702 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 HSDL2Q6YN16 418 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 GPR155Q7Z3F1 870 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 SNX32Q86XE0 403 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 POU5F2Q8N7G0 328 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ANKS4BQ8N8V4 417 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 CCDC197Q8NCU1 140 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 VPS37AQ8NEZ2 397 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 GOT1L1Q8NHS2 421 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ERP27Q96DN0 273 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 C16orf58Q96GQ5 468 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ART5Q96L15 291 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 PANX1Q96RD7 426 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ITPAQ9BY32 194 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 DEFB126Q9BYW3 111 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 WWTR1Q9GZV5 400 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 PAIP1Q9H074 479 aaKnown RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 CDCP1Q9H5V8 836 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF552Q9H707 407 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 ZBTB20Q9HC78 741 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 DDX18Q9NVP1 670 aaKnown RBP11.89□□□□□ -0.51
SHMT2-227ENST00000557269 GPR83Q9NYM4 423 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 PTGFRNQ9P2B2 879 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 MAP10Q9P2G4 905 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 CAPN7Q9Y6W3 813 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 LOC400499M0QZD8 3231 aa11.89□□□□□ -0.51
SHMT2-227ENST00000557269 TPRP12270 2363 aaKnown RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 CAPN14A8MX76 684 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 WWP2O00308 870 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 RFXANKO14593 260 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 EMC8O43402 210 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 PRAMEF2O60811 474 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ZFAND5O76080 213 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 SLITRK5O94991 958 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 IFI6P09912 130 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 HOXB9P17482 250 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ADSLP30566 484 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 SOAT1P35610 550 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 SOX11P35716 441 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 CASP9P55211 416 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 POLE2P56282 527 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 CBX1P83916 185 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 MYBPC3Q14896 1274 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 JMJD6Q6NYC1 403 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 TMEM64Q6YI46 380 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF621Q6ZSS3 439 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 MSANTD1Q6ZTZ1 278 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 SZRD1Q7Z422 152 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 MSRB3Q8IXL7 192 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ARMC10Q8N2F6 343 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF441Q8N8Z8 693 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 NUP43Q8NFH3 380 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 OR8K3Q8NH51 312 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 TTC9Q92623 222 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ADIPOR1Q96A54 375 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 OTUB1Q96FW1 271 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 ITCHQ96J02 903 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 VSTM2LQ96N03 204 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 GAL3ST4Q96RP7 486 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 YIPF4Q9BSR8 244 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 SERHL2Q9H4I8 314 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 EPS8L2Q9H6S3 715 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 FOLH1BQ9HBA9 442 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 NEUROD4Q9HD90 331 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 EQTNQ9NQ60 294 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms