RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ATF6BQ99941 703 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 TEX12Q9BXU0 123 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SLC38A1Q9H2H9 487 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ABHD16BQ9H3Z7 469 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 IKZF5Q9H5V7 419 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 REEP1Q9H902 201 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 DUSP12Q9UNI6 340 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SAMD4AQ9UPU9 718 aaKnown RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 GAB2Q9UQC2 676 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF541Q9H0D2 1346 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF638Q14966 1978 aaKnown RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SMIM30A4D0T7 59 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SLC19A2O60779 497 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 GIPP09681 153 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ANXA8P13928 327 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 BPIP17213 487 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ADCYAP1P18509 176 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 LAG3P18627 525 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CEACAM6P40199 344 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 BEX3Q00994 111 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 NHLH2Q02577 135 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 MLLT11Q13015 90 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 PYY3Q5JQD4 70 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ANXA8L1Q5VT79 327 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 HACD4Q5VWC8 232 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 NCBP2-AS2Q69YL0 99 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CLEC2AQ6UVW9 174 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 BAIAP2L2Q6UXY1 529 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CMIPQ8IY22 773 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF687Q8N1G0 1237 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 BMPERQ8N8U9 685 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 RELL2Q8NC24 303 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 OR9A2Q8NGT5 310 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 TM9SF4Q92544 642 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 S100PBPQ96BU1 408 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SENP5Q96HI0 755 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 C12orf66Q96MD2 445 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ZFP42Q96MM3 310 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ARL6Q9H0F7 186 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 HMSDA8MTL9 139 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 STK25O00506 426 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 HNRNPDLO14979 420 aaKnown RBP13.1□□□□□ -0.31
SHMT2-226ENST00000556825 DIRAS1O95057 198 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 HPXP02790 462 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 ESR1P03372 595 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 FABP3P05413 133 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 HMBSP08397 361 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 CNR1P21554 472 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 MSX1P28360 303 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 NPBWR1P48145 328 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 PKIAP61925 76 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF239Q16600 458 aaKnown RBP13.1□□□□□ -0.31
SHMT2-226ENST00000556825 FAM102BQ5T8I3 360 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 SYPL2Q5VXT5 272 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 HEPHL1Q6MZM0 1159 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 TMPRSS11FQ6ZWK6 438 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 MOB3CQ70IA8 216 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 RASGEF1AQ8N9B8 481 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 PCSK9Q8NBP7 692 aaKnown RBP13.1□□□□□ -0.31
SHMT2-226ENST00000556825 TMEM185AQ8NFB2 350 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 ARMC5Q96C12 935 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 POLR2J2Q9GZM3 115 aaKnown RBP13.1□□□□□ -0.31
SHMT2-226ENST00000556825 C1orf109Q9NX04 203 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 NLGN3Q9NZ94 848 aa13.1□□□□□ -0.31
SHMT2-226ENST00000556825 UXTQ9UBK9 157 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-226ENST00000556825 AGAP14A8MT82 685 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 C5orf58C9J3I9 102 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 PFKMP08237 780 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 HIST1H1BP16401 226 aaKnown RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 VIPR1P32241 457 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CSF2RBP32927 897 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 LHX1P48742 406 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CSNK1EP49674 416 aaKnown RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 RAB5CP51148 216 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ADPRHP54922 357 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 RAP2BP61225 183 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 GLO1Q04760 184 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 TNFRSF9Q07011 255 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 DOC2AQ14183 400 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ALG11Q2TAA5 492 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 MINDY4Q4G0A6 757 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 SLC35D3Q5M8T2 416 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 PRAMEF18Q5VWM3 479 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CDC42EP5Q6NZY7 148 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 LCLAT1Q6UWP7 414 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 VITQ6UXI7 678 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 PID1Q7Z2X4 250 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ASB16Q96NS5 453 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 MRIQ9BWK5 157 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 AMNQ9BXJ7 453 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CACNG6Q9BXT2 260 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ZDHHC5Q9C0B5 715 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 RASL12Q9NYN1 266 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 NTMQ9P121 344 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ACSL6Q9UKU0 697 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 KDM4EB2RXH2 506 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-226ENST00000556825 NPIPB9F8W1W9 429 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 AP4M1O00189 453 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 ANXA9O76027 345 aa13.09□□□□□ -0.31
SHMT2-226ENST00000556825 CD19P15391 556 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms