RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ETV1P50549 477 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CDKN2DP55273 166 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PLIN5Q00G26 463 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 NFATC2Q13469 925 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ELOCQ15369 112 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TOR1AIP1Q5JTV8 583 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SLC35F1Q5T1Q4 408 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ZBTB37Q5TC79 503 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 LAMTOR1Q6IAA8 161 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SCIMPQ6UWF3 145 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PAMR1Q6UXH9 720 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SNX20Q7Z614 316 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TAF8Q7Z7C8 310 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SERPINA9Q86WD7 417 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 RNF130Q86XS8 419 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KRT73Q86Y46 540 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KIF18BQ86Y91 864 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CCDC71Q8IV32 467 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 OR10Z1Q8NGY1 313 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ENKURQ8TC29 256 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 GPR151Q8TDV0 419 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ADAMTS14Q8WXS8 1223 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 UBE2FQ969M7 185 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TBC1D20Q96BZ9 403 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PYURFQ96I23 114 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 BARD1Q99728 777 aaKnown RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SPATA9Q9BWV2 254 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SRRQ9GZT4 340 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 C11orf54Q9H0W9 315 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KRT84Q9NSB2 600 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ATP6V1HQ9UI12 483 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 APC2O95996 2303 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ACACAQ13085 2346 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 A0A1B0GTL3 188 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 MYO1GB0I1T2 1018 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 TSC22D2O75157 780 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 TNFRSF21O75509 655 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CREG1O75629 220 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 SLC25A14O95258 325 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 HSMCR30P0CW71 290 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ALPPL2P10696 532 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 UROSP10746 265 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CKMT1AP12532 417 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 IL1RNP18510 177 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ITGALP20701 1170 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ACP1P24666 158 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DGKQP52824 942 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DCDC1P59894 354 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 RPP38P78345 283 aaKnown RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 FOXK2Q01167 660 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 RGS1Q08116 209 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GALEQ14376 348 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GPR19Q15760 415 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF79Q15937 498 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 C6orf136Q5SQH8 315 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 C6orf132Q5T0Z8 1188 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GARNL3Q5VVW2 1013 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GUSBP11Q6P575 273 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF782Q6ZMW2 699 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 PIM3Q86V86 326 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZDHHC21Q8IVQ6 265 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ENTHD1Q8IYW4 607 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 TRAM1L1Q8N609 369 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 FAM181AQ8N9Y4 354 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 FAM46DQ8NEK8 389 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 OR2T11Q8NH01 316 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 PATE1Q8WXA2 126 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GLYATL1Q969I3 302 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 SCARF2Q96GP6 870 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 COL21A1Q96P44 957 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 PITX2Q99697 317 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 C19orf43Q9BQ61 176 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 UQCC2Q9BRT2 126 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DUSP23Q9BVJ7 150 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 BOCQ9BWV1 1114 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 OR2AG1Q9H205 316 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF304Q9HCX3 659 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF224Q9NZL3 707 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 VAPAQ9P0L0 249 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 GULP1Q9UBP9 304 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CRLS1Q9UJA2 301 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 VPS9D1Q9Y2B5 631 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 NEUROG3Q9Y4Z2 214 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CPED1A4D0V7 1026 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 CLCA1A8K7I4 914 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 A8MUA0 341 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 TOR1AO14656 332 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 VPS26AO75436 327 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 EML2O95834 649 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 IFNA16P05015 189 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 MTHFD2P13995 350 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF250P15622 560 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF8P17098 575 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 DDCP20711 480 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 ALAS2P22557 587 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 EPHA2P29317 976 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 SLC19A1P41440 591 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 TIAL1Q01085 375 aaKnown RBP eCLIP7.25□□□□□ -1.25
LIMA1-216ENST00000552909 RHAGQ02094 409 aa7.25□□□□□ -1.25
LIMA1-216ENST00000552909 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms