RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 K7EQS6 105 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 CNOT3O75175 753 aaKnown RBP15.94■□□□□ 0.14
USP28-208ENST00000540438 DLGAP3O95886 979 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 RBBP4Q09028 425 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 HYAL2Q12891 473 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 PGBD2Q6P3X8 592 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 POC5Q8NA72 575 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 SLC16A11Q8NCK7 471 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 OR2L3Q8NG85 312 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 OR5T3Q8NGG3 340 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 HDAC8Q9BY41 377 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 FTSJ1Q9UET6 329 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 PCDHGB1Q9Y5G3 927 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 GPR4P46093 362 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 CXCR4P61073 352 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 C1orf61Q13536 156 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 GINS1Q14691 196 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 RPE65Q16518 533 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 DEFB110Q30KQ9 67 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZMAT1Q5H9K5 638 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 CASP12Q6UXS9 341 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 FAM92BQ6ZTR7 304 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF438Q7Z4V0 828 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 CADM3Q8N126 398 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 NLGN4YQ8NFZ3 816 aaPredicted RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 SUN3Q8TAQ9 357 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 OR1E3Q8WZA6 343 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 CXorf40BQ96DE9 158 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 FAM46AQ96IP4 442 aaKnown RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 NEURL2Q9BR09 285 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 TCEAL2Q9H3H9 227 aaPredicted RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 CLN6Q9NWW5 311 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 REV1Q9UBZ9 1251 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 MRPS2Q9Y399 296 aaKnown RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 FREM2Q5SZK8 3169 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 FAM183AA6NL82 134 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 GPX5O75715 221 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 KLF8O95600 359 aaPredicted RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 CLEC2LP0C7M8 214 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF888P0CJ79 500 aaPredicted RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 DDX5P17844 614 aaKnown RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 HIST1H1TP22492 207 aaPredicted RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 DAB2P98082 770 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF33BQ06732 778 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF404Q494X3 552 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF770Q6IQ21 691 aaPredicted RBP15.93■□□□□ 0.14
USP28-208ENST00000540438 ANKRD54Q6NXT1 300 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF765Q7L2R6 523 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 ZNF614Q8N883 585 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 SLC6A18Q96N87 628 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 CDADC1Q9BWV3 514 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 BTBD1Q9H0C5 482 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 CCNB1IP1Q9NPC3 277 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 A4GNTQ9UNA3 340 aa15.93■□□□□ 0.14
USP28-208ENST00000540438 LOC105369274A0A096LPK9 316 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 LOC102723532A0A0G2JNH3 316 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 ZC3H12DA2A288 527 aaKnown RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 CDC123O75794 336 aaPredicted RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 EGFP01133 1207 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 CELA2BP08218 269 aaPredicted RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 GKN3PP0CG01 181 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 GRK3P35626 688 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 KCNC4Q03721 635 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SSX1Q16384 188 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 FCRLBQ6BAA4 426 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 FAM111BQ6SJ93 734 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 LHFPL3Q86UP9 236 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 OR4N4Q8N0Y3 316 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 HCAR2Q8TDS4 363 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 LRR1Q96L50 414 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SIGLEC11Q96RL6 698 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 APOOQ9BUR5 198 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 TEX101Q9BY14 249 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 TTTY10Q9BZA0 68 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 THSD1Q9NS62 852 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 FBXO34Q9NWN3 711 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 COL4A3Q01955 1670 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 CXCR2P25025 360 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 ATP5A1P25705 553 aaKnown RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 TRHRP34981 398 aaPredicted RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 KCNJ5P48544 419 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 EIF2B2P49770 351 aaKnown RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 GPR68Q15743 365 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 MLIPQ5VWP3 458 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 PPP2R2DQ66LE6 453 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SLC30A6Q6NXT4 461 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SLC46A3Q7Z3Q1 461 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 GHDCQ8N2G8 530 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 SYT14Q8NB59 555 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 CHPT1Q8WUD6 406 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 IPCEF1Q8WWN9 437 aaPredicted RBP15.92■□□□□ 0.14
USP28-208ENST00000540438 TP53INP1Q96A56 240 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 TBC1D20Q96BZ9 403 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 TSSK6Q9BXA6 273 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 NECTIN3Q9NQS3 549 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 PRDM7Q9NQW5 492 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 ALPK3Q96L96 1907 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 A0A0A6YYD5 115 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 MAN2B1O00754 1011 aa15.92■□□□□ 0.14
USP28-208ENST00000540438 GNB5O14775 395 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms