RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CHCHD2Q9Y6H1 151 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 FLNCQ14315 2725 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 NINQ8N4C6 2090 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 HECTD1Q9ULT8 2610 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 USP9YO00507 2555 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 A0A1B0GVC2 190 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 SMIM23A6NLE4 172 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 FAM166BA8MTA8 275 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 E9PLN8 166 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 PRRG2O14669 202 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 CDC40O60508 579 aaKnown RBP eCLIP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 ERAL1O75616 437 aaKnown RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 IGHG3P01860 377 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 ENO1P06733 434 aaKnown RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 RFPL3SP0C7P2 107 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 MYL2P10916 166 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 DRD2P14416 443 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 KRT4P19013 534 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 CSNK2A2P19784 350 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 NT5EP21589 574 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 MAGEA5P43359 124 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 VSNL1P62760 191 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 PLGLB1Q02325 96 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 LCP2Q13094 533 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 DUSP8Q13202 625 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 NTRK2Q16620 822 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 MTFR2Q6P444 385 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 GALNT18Q6P9A2 607 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 PAOXQ6QHF9 649 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 FAM47EQ6ZV65 393 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 TRIM46Q7Z4K8 759 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 GALNT12Q8IXK2 581 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 CCDC116Q8IYX3 515 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 SLC34A3Q8N130 599 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 ADCY4Q8NFM4 1077 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 OR7G1Q8NGA0 311 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 SPACA9Q96E40 222 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 MAGED4Q96JG8 741 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 VKORC1Q9BQB6 163 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 RYDENQ9NUL5 291 aaKnown RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 MAT2BQ9NZL9 334 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 CNIH4Q9P003 139 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 CNOT11Q9UKZ1 510 aaKnown RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 PLLPQ9Y342 182 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 CCL27Q9Y4X3 112 aa8.6□□□□□ -1.03
HDAC3-215ENST00000519474 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.6□□□□□ -1.03
HDAC3-215ENST00000519474 PTPN13Q12923 2485 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 PRSS44E7EML9 344 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 NPIPA2E9PIF3 369 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 NPIPA3F8WFD2 350 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 COPEO14579 308 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 CDH16O75309 829 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 CBX7O95931 251 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ATP1B1P05026 303 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 IL3P08700 152 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 CELA3AP09093 270 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 AGAP20933 346 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 HTR1EP28566 365 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ALDH9A1P49189 494 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 EMDP50402 254 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 NAA20P61599 178 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ACSM2AQ08AH3 577 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 C2orf80Q0P641 193 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 EXOSC7Q15024 291 aaKnown RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 KIAA0040Q15053 153 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ZNF630Q2M218 657 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ACSM2BQ68CK6 577 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 DESI1Q6ICB0 168 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 RPTNQ6XPR3 784 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 GK5Q6ZS86 529 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 Q6ZSR9 355 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 FRMD7Q6ZUT3 714 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 TRILQ7L0X0 811 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 SLC22A16Q86VW1 577 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 C10orf107Q8IVU9 208 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 PEX5LQ8IYB4 626 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 TAGAPQ8N103 731 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 C4orf33Q8N1A6 199 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 BANPQ8N9N5 519 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 OR10G3Q8NGC4 313 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 OR5M3Q8NGP4 307 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 RDH11Q8TC12 318 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 SPPL2AQ8TCT8 520 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 PHF10Q8WUB8 498 aaKnown RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 GAL3ST4Q96RP7 486 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 FAIM2Q9BWQ8 316 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 GATA5Q9BWX5 397 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 SHCBP1LQ9BZQ2 653 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 NXF5Q9H1B4 397 aaKnown RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ANKRA2Q9H9E1 313 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 UTS2RQ9UKP6 389 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 EXO1Q9UQ84 846 aaKnown RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ENTPD4Q9Y227 616 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 DTX4Q9Y2E6 619 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 STK38LQ9Y2H1 464 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 KLF2Q9Y5W3 355 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-215ENST00000519474 LIPGQ9Y5X9 500 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 ZNF780BQ9Y6R6 833 aa8.59□□□□□ -1.03
HDAC3-215ENST00000519474 SETXQ7Z333 2677 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms