RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 NEDD8-MDP1E9PL57 170 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 XPO1O14980 1071 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 RIPK2O43353 540 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 GMFGO60234 142 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 MBD3O95983 291 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 TSPAN8P19075 237 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 HTR2AP28223 471 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 PDHA2P29803 388 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 AXLP30530 894 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 FCGR2CP31995 323 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 DLSTP36957 453 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 GBX2P52951 348 aaPredicted RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 CRYBA2P53672 197 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 ACTR1AP61163 376 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 PPIAP62937 165 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 RPS27AP62979 156 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 HERVK_113P63132 956 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 ERVK-8P63133 956 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 EXOSC2Q13868 293 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 MLF2Q15773 248 aaPredicted RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 KNOP1Q1ED39 458 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 SLC36A3Q495N2 470 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 CEP85LQ5SZL2 805 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 ASPHD2Q6ICH7 369 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 CASC1Q6TDU7 716 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 CBLN3Q6UW01 205 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 C3P1Q6ZMU1 363 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 FRRS1Q6ZNA5 592 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 NOTCH2NLQ7Z3S9 236 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 VPS36Q86VN1 386 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 CBWD2Q8IUF1 395 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 PYROXD2Q8N2H3 581 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 NFAM1Q8NET5 270 aaPredicted RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 OR10G7Q8NGN6 311 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 FBXO25Q8TCJ0 367 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 N4BP2L2Q92802 583 aaPredicted RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 C11orf52Q96A22 123 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 PINX1Q96BK5 328 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 C4orf36Q96KX1 117 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 ERVK-6Q9BXR3 956 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 DGCR6LQ9BY27 220 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 ALG9Q9H6U8 611 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 KAT8Q9H7Z6 458 aaKnown RBP3.61□□□□□ -1.83
XRN1-213ENST00000489241 MED20Q9H944 212 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 COG4Q9H9E3 785 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 FGF22Q9HCT0 170 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 SPHK2Q9NRA0 654 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 AGPAT5Q9NUQ2 364 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 TUBGCP4Q9UGJ1 667 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 FZR1Q9UM11 496 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 SNX6Q9UNH7 406 aa3.61□□□□□ -1.83
XRN1-213ENST00000489241 H0YL77 283 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 H3BMH7 237 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 H3BTX0 84 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 IMPA2O14732 288 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ZG16O60844 167 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ZFAND5O76080 213 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 MFN2O95140 757 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 NXPH2O95156 264 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ANXA4P09525 319 aaPredicted RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 PDHBP11177 359 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 AOC1P19801 751 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 PRKACGP22612 351 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 PAX7P23759 505 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 OTX2P32243 289 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 RPL9P32969 192 aaKnown RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 NDST2P52849 883 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 PEX3P56589 373 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ERVK-16P61578 105 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 CYCSP99999 105 aaKnown RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 CHIT1Q13231 466 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ENPP2Q13822 863 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 SHROOM1Q2M3G4 852 aaPredicted RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 MAJINQ3KP22 176 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 DCAF4L1Q3SXM0 396 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ZFP69Q49AA0 526 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ZNF311Q5JNZ3 666 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ATAD3BQ5T9A4 648 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 KIF6Q6ZMV9 814 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 LPCAT2Q7L5N7 544 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 VASH2Q86V25 355 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 RANBP3LQ86VV4 465 aaPredicted RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 CCDC36Q8IYA8 594 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ICA1LQ8NDH6 482 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 OR1K1Q8NGR3 316 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 OR2T3Q8NH03 318 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 C11orf45Q8TAV5 145 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ZNF519Q8TB69 540 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 VSTM2LQ96N03 204 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 TTC25Q96NG3 672 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 VPS35Q96QK1 796 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 USP28Q96RU2 1077 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 CPXM1Q96SM3 734 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 ZSCAN5AQ9BUG6 496 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 POLR1EQ9GZS1 481 aaKnown RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 RPAP3Q9H6T3 665 aaPredicted RBP3.6□□□□□ -1.83
XRN1-213ENST00000489241 GORASP2Q9H8Y8 452 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 NRN1Q9NPD7 142 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 B3GAT2Q9NPZ5 323 aa3.6□□□□□ -1.83
XRN1-213ENST00000489241 TRPV5Q9NQA5 729 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms