RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TMEM64Q6YI46 380 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 CCDC81Q6ZN84 652 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 RNF111Q6ZNA4 994 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 DHDDSQ86SQ9 333 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 OR2L13Q8N349 312 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 SIMC1Q8NDZ2 872 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 NUP43Q8NFH3 380 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 OR52R1Q8NGF1 315 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 OR56A1Q8NGH5 318 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 OR1N1Q8NGS0 311 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 OR5AK3PQ8NH89 298 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 DNAJB8Q8NHS0 232 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 M1APQ8TC57 530 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 SFXN5Q8TD22 340 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 ZCCHC14Q8WYQ9 949 aaKnown RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 MOAP1Q96BY2 351 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 FAM120BQ96EK7 910 aaKnown RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 VMP1Q96GC9 406 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 FER1L6-AS2Q96M78 137 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 PHF12Q96QT6 1004 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 SLC35A5Q9BS91 424 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 OR10A5Q9H207 317 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 SLC6A13Q9NSD5 602 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 ZCCHC3Q9NUD5 404 aaKnown RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 GID8Q9NWU2 228 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 NTMQ9P121 344 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 PTPRQQ9UMZ3 2332 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 PPIEQ9UNP9 301 aaKnown RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 PCDHB14Q9Y5E9 798 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 TRBV11-1A0A0K0K1C0 115 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 RNF103-CHMP3A0A140T963 221 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 TMEM8BA6NDV4 472 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 TAF4O00268 1085 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 PRAMEF2O60811 474 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 COQ9O75208 318 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 NME6O75414 186 aaPredicted RBP11.38□□□□□ -0.59
SDC1-206ENST00000482879 CLPSP04118 112 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 PTPN6P29350 595 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 CHI3L1P36222 383 aaPredicted RBP11.38□□□□□ -0.59
SDC1-206ENST00000482879 CLCN2P51788 898 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 MNAT1P51948 309 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 SLC37A1P57057 533 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 TLE3Q04726 772 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 DUSP8Q13202 625 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 GAB1Q13480 694 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 TP53BP2Q13625 1128 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 TRMT5Q32P41 509 aaKnown RBP11.38□□□□□ -0.59
SDC1-206ENST00000482879 DCAF10Q5QP82 559 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 BHLHB9Q6PI77 547 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 C6orf89Q6UWU4 347 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 C6orf120Q7Z4R8 191 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 PROSER1Q86XN7 944 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 ZNF615Q8N8J6 731 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 APCDD1LQ8NCL9 501 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 CGREF1Q99674 301 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 SEMA4CQ9C0C4 833 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 ATP13A2Q9NQ11 1180 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 EQTNQ9NQ60 294 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.38□□□□□ -0.59
SDC1-206ENST00000482879 VAPAQ9P0L0 249 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 PRODH2Q9UF12 536 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.38□□□□□ -0.59
SDC1-206ENST00000482879 POLHQ9Y253 713 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 CFL2Q9Y281 166 aa11.38□□□□□ -0.59
SDC1-206ENST00000482879 ANKRD11Q6UB99 2663 aaPredicted RBP11.38□□□□□ -0.59
SDC1-206ENST00000482879 ARGFXA6NJG6 315 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 EBAG9O00559 213 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 ZFAND5O76080 213 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 KRT75O95678 551 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 NPPAP01160 153 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 CELA2AP08217 269 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 T-ENOLP0DO92 83 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 HOXB9P17482 250 aaPredicted RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 CALB2P22676 271 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 ITPKBP27987 946 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 EMDP50402 254 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 NUDT2P50583 147 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 RRADP55042 308 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 Q0VFX4 171 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 AIMP2Q13155 320 aaKnown RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 CAPRIN1Q14444 709 aaKnown RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 DEFB109BQ30KR1 87 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 SAXO2Q658L1 398 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 HSDL2Q6YN16 418 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 SLC29A4Q7RTT9 530 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 MSRB3Q8IXL7 192 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 KBTBD2Q8IY47 623 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 KIF2BQ8N4N8 673 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 TMEM102Q8N9M5 508 aaPredicted RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 C16orf52Q8NHV5 167 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 ELP5Q8TE02 316 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 ZFP90Q8TF47 636 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 ROPN1LQ96C74 230 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 LRRC58Q96CX6 371 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 NEURL3Q96EH8 262 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 AURKBQ96GD4 344 aaPredicted RBP11.37□□□□□ -0.59
SDC1-206ENST00000482879 SLC35G5Q96KT7 338 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 MS4A4EQ96PG1 132 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 DEFB126Q9BYW3 111 aa11.37□□□□□ -0.59
SDC1-206ENST00000482879 EPS8L2Q9H6S3 715 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms