RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 CCDC116Q8IYX3 515 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 ARMC10Q8N2F6 343 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 LRRC25Q8N386 305 aaPredicted RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 GALNT16Q8N428 558 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF615Q8N8J6 731 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 OR7G2Q8NG99 324 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 OR14A16Q8NHC5 309 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 M1APQ8TC57 530 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF675Q8TD23 568 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 BRIX1Q8TDN6 353 aaKnown RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 C10orf82Q8WW14 230 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 APOBEC4Q8WW27 367 aaKnown RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 KAT2AQ92830 837 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 RIT1Q92963 219 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 NCLNQ969V3 563 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 PPCDCQ96CD2 204 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 MTERF3Q96E29 417 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 CHMP6Q96FZ7 201 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 RBM18Q96H35 190 aaKnown RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 FBXL20Q96IG2 436 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 CCDC28BQ9BUN5 200 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 OR8D2Q9GZM6 311 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF552Q9H707 407 aaPredicted RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 ATP13A2Q9NQ11 1180 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 SIRT3Q9NTG7 399 aaPredicted RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 SH3BP4Q9P0V3 963 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 C19orf25Q9UFG5 118 aaPredicted RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 EIF3LQ9Y262 564 aaKnown RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 DTX4Q9Y2E6 619 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 COPG1Q9Y678 874 aaKnown RBP6.49□□□□□ -1.37
LIMD1-204ENST00000474665 HEATR5AQ86XA9 2040 aa6.49□□□□□ -1.37
LIMD1-204ENST00000474665 APCP25054 2843 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 DIDO1Q9BTC0 2240 aaKnown RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ASPDHA6ND91 283 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 OR10H2O60403 315 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PLOD3O60568 738 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PSMG1O95456 288 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 IDO1P14902 403 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PTPN6P29350 595 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 EMDP50402 254 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PGDP52209 483 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 RRADP55042 308 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 GNGT1P63211 74 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 MAD2L1Q13257 205 aaPredicted RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 BIKQ13323 160 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 MYBPC3Q14896 1274 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 EXT1Q16394 746 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 FAM174BQ3ZCQ3 159 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PDCD4Q53EL6 469 aaKnown RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 SPANXN4Q5MJ08 99 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 EXOSC6Q5RKV6 272 aaKnown RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 CPTPQ5TA50 214 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF468Q5VIY5 522 aaPredicted RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 OR4F3Q6IEY1 312 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PAOXQ6QHF9 649 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF227Q86WZ6 799 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 MCEMP1Q8IX19 187 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 GALNT12Q8IXK2 581 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 KBTBD2Q8IY47 623 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 CLECL1Q8IZS7 167 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 SIRT6Q8N6T7 355 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF441Q8N8Z8 693 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 CLEC1AQ8NC01 280 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 MORN4Q8NDC4 146 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 OR8J2Q8NGG1 315 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 OR1N1Q8NGS0 311 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PSMA8Q8TAA3 256 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 DAZLQ92904 295 aaKnown RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 TESCQ96BS2 214 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 THOC3Q96J01 351 aaKnown RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 FER1L6-AS2Q96M78 137 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 DGAT2Q96PD7 388 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 CNPPD1Q9BV87 410 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 TMEM120AQ9BXJ8 343 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 DPY30Q9C005 99 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 LHPPQ9H008 270 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 RABEP2Q9H5N1 569 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 LIN28AQ9H9Z2 209 aaKnown RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 SERHLQ9NQF3 203 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 MIEF1Q9NQG6 463 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 SLC6A13Q9NSD5 602 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ACSS1Q9NUB1 689 aaPredicted RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 GPR83Q9NYM4 423 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 NTMQ9P121 344 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ERRFI1Q9UJM3 462 aaPredicted RBP6.48□□□□□ -1.37
LIMD1-204ENST00000474665 PSME2Q9UL46 239 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ERVK-19Q9WJR5 959 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 CSAG2Q9Y5P2 127 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 CLCA3PQ9Y6N3 262 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF780BQ9Y6R6 833 aa6.48□□□□□ -1.37
LIMD1-204ENST00000474665 ESPL1Q14674 2120 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 CSMD2Q7Z408 3487 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 TRBV11-1A0A0K0K1C0 115 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 GMNCA6NCL1 334 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 UPK1AO00322 258 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 PLOD2O00469 737 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 PDPK1O15530 556 aa6.47□□□□□ -1.37
LIMD1-204ENST00000474665 HNRNPRO43390 633 aaKnown RBP6.47□□□□□ -1.37
LIMD1-204ENST00000474665 SNX3O60493 162 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms