RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 UGT2B17O75795 530 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 GRK3P35626 688 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 KIR2DL1P43626 348 aaPredicted RBP17.99■□□□□ 0.47
VIM-203ENST00000469543 TRIM73Q86UV7 250 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 TMEFF1Q8IYR6 380 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 TRMT61AQ96FX7 289 aaKnown RBP17.99■□□□□ 0.47
VIM-203ENST00000469543 EGLN3Q9H6Z9 239 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 ACSS1Q9NUB1 689 aaPredicted RBP17.99■□□□□ 0.47
VIM-203ENST00000469543 A8MVJ9 347 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 ADAP00813 363 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 PKLRP30613 574 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 LBX1P52954 281 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 ILKQ13418 452 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 TMEM196Q5HYL7 178 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 SYCE2Q6PIF2 218 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 VRK2Q86Y07 508 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 OR4K5Q8NGD3 323 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 TSACCQ96A04 125 aaPredicted RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 FNDC11Q9BVV2 318 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 C1QTNF2Q9BXJ5 285 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 IL20RAQ9UHF4 553 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 CARD8Q9Y2G2 431 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 PRICKLE3O43900 615 aaPredicted RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 RNGTTO60942 597 aaKnown RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 CD40LGP29965 261 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 SLC15A1P46059 708 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 LIMK1P53667 647 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 RPS21P63220 83 aaKnown RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 BTN3A2P78410 334 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 CHRNEQ04844 493 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 SFTPA2Q8IWL1 248 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 OR2L8Q8NGY9 312 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 TPK1Q9H3S4 243 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 SLC25A19Q9HC21 320 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 EXOSC4Q9NPD3 245 aaKnown RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 TAS2R7Q9NYW3 318 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 PCDHGA3Q9Y5H0 932 aa17.98■□□□□ 0.47
VIM-203ENST00000469543 DNMT3AQ9Y6K1 912 aaPredicted RBP17.98■□□□□ 0.47
VIM-203ENST00000469543 TBX19O60806 448 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 ASGR2P07307 311 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 COL9A1P20849 921 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 ZIC1Q15915 447 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 C6orf132Q5T0Z8 1188 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 USP43Q70EL4 1123 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 FUZQ9BT04 418 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 APOOQ9BUR5 198 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 CNPPD1Q9BV87 410 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 CDCA4Q9BXL8 241 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 POLMQ9NP87 494 aaPredicted RBP17.97■□□□□ 0.47
VIM-203ENST00000469543 SLC17A4Q9Y2C5 497 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 EIF2DP41214 584 aaKnown RBP17.97■□□□□ 0.47
VIM-203ENST00000469543 PPP5CP53041 499 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 STEAP3Q658P3 488 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 CASP12Q6UXS9 341 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 TMEM203Q969S6 136 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 OPALINQ96PE5 141 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 PSD2Q9BQI7 771 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 HHATLQ9HCP6 504 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 CNIH4Q9P003 139 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 CHST2Q9Y4C5 530 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 SPTBP11277 2137 aa17.97■□□□□ 0.47
VIM-203ENST00000469543 AGAP5A6NIR3 686 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 HBQ1P09105 142 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 MAN2A2P49641 1150 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 UGT2B15P54855 530 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 ADPRHP54922 357 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 DMPKQ09013 629 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 CLEC12AQ5QGZ9 265 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 PLEKHG7Q6ZR37 379 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 UBE2Q1Q7Z7E8 422 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 SLC30A8Q8IWU4 369 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 RAB42Q8N4Z0 105 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 PARP16Q8N5Y8 322 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 KIAA1958Q8N8K9 716 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 TRPV4Q9HBA0 871 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 ACAD8Q9UKU7 415 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 ATG2AQ2TAZ0 1938 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 SMIM30A4D0T7 59 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 PDE9AO76083 593 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 DRD2P14416 443 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 PORP16435 677 aaPredicted RBP17.96■□□□□ 0.47
VIM-203ENST00000469543 OLR1P78380 273 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 GINS1Q14691 196 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 SHHQ15465 462 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 SHFQ7M4L6 423 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 MMP27Q9H306 513 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 NT5DC2Q9H857 520 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 WDR70Q9NW82 654 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 CES1P1Q9UKY3 287 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 MKLN1Q9UL63 735 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 MGAT4BQ9UQ53 548 aa17.96■□□□□ 0.47
VIM-203ENST00000469543 EFCAB10A6NFE3 127 aa17.95■□□□□ 0.46
VIM-203ENST00000469543 CPSF4LA6NMK7 179 aaKnown RBP17.95■□□□□ 0.46
VIM-203ENST00000469543 FAAHO00519 579 aa17.95■□□□□ 0.46
VIM-203ENST00000469543 CSO75390 466 aaKnown RBP17.95■□□□□ 0.46
VIM-203ENST00000469543 ZIC2O95409 532 aaPredicted RBP17.95■□□□□ 0.46
VIM-203ENST00000469543 POU2F2P09086 479 aa17.95■□□□□ 0.46
VIM-203ENST00000469543 NTSP30990 170 aa17.95■□□□□ 0.46
VIM-203ENST00000469543 TRHRP34981 398 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms