RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 TMEM107Q6UX40 140 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 ANKRD46Q86W74 232 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 TREML1Q86YW5 311 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 APLFQ8IW19 511 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-204ENST00000452182 KBTBD2Q8IY47 623 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 DPP10Q8N608 796 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 FITM2Q8N6M3 262 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 ZNF615Q8N8J6 731 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 OR4A15Q8NGL6 344 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 SFXN5Q8TD22 340 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 GTF2H4Q92759 462 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 KAT2AQ92830 837 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 NCLNQ969V3 563 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 CMTM5Q96DZ9 223 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 CNPPD1Q9BV87 410 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 NUDT9Q9BW91 350 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 TRIM4Q9C037 500 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 OR10A5Q9H207 317 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 C3orf14Q9HBI5 128 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 DDX18Q9NVP1 670 aaKnown RBP10.77□□□□□ -0.68
SCN9A-204ENST00000452182 LEF1Q9UJU2 399 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-204ENST00000452182 CFL2Q9Y281 166 aa10.77□□□□□ -0.68
SCN9A-204ENST00000452182 LOC400499M0QZD8 3231 aa10.77□□□□□ -0.69
SCN9A-204ENST00000452182 EMC8O43402 210 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PRAMEF2O60811 474 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 COQ9O75208 318 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ERN1O75460 977 aaKnown RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 EFNA1P20827 205 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PTPN6P29350 595 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 SSTR4P31391 388 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PTGER1P34995 402 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CBX1P83916 185 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PRR5P85299 388 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 Q0VFX4 171 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CHAF1BQ13112 559 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 STX5Q13190 355 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CYLC2Q14093 348 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 LRIF1Q5T3J3 769 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 BHLHB9Q6PI77 547 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 SLC2A7Q6PXP3 512 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 HSDL2Q6YN16 418 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 RNF111Q6ZNA4 994 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 SNX32Q86XE0 403 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ARMC10Q8N2F6 343 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 TRIML2Q8N7C3 387 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 FAM120BQ96EK7 910 aaKnown RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ING2Q9H160 280 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CXorf36Q9H7Y0 433 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CPNE5Q9HCH3 593 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PRODH2Q9UF12 536 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ZNF223Q9UK11 482 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 VPS4AQ9UN37 437 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 KCNMB2Q9Y691 235 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 A0A096LPI6 279 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 LOC100653049A0A140TA62 436 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ARGFXA6NJG6 315 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 FBP2O00757 339 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 KRT34O76011 436 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CPSF4O95639 269 aaKnown RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 NPPAP01160 153 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ABCB1P08183 1280 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 COX4I1P13073 169 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 HOXB9P17482 250 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 UQCRC2P22695 453 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 CCT3P49368 545 aaKnown RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 EMDP50402 254 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 DUSP8Q13202 625 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 MYBPC3Q14896 1274 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 KRT72Q14CN4 511 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 DEFB109BQ30KR1 87 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PAGE3Q5JUK9 113 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 C6orf10Q5SRN2 563 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 H3F3CQ6NXT2 135 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ZCCHC12Q6PEW1 402 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 RETREG3Q86VR2 466 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ZNF321PQ8N8H1 164 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 C17orf47Q8NEP4 570 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 OR52R1Q8NGF1 315 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 OR56A1Q8NGH5 318 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 NUBPLQ8TB37 319 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 HOXB13Q92826 284 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 INPP5KQ9BT40 448 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 PAIP1Q9H074 479 aaKnown RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ZCCHC3Q9NUD5 404 aaKnown RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ZMIZ1Q9ULJ6 1067 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 SNX8Q9Y5X2 465 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 GMEB1Q9Y692 573 aa10.76□□□□□ -0.69
SCN9A-204ENST00000452182 NUP214P35658 2090 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 ANKRD11Q6UB99 2663 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-204ENST00000452182 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 TRBV11-1A0A0K0K1C0 115 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 TTC36A6NLP5 189 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 ZFAND5O76080 213 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 KCNH1O95259 989 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 CDKN2CP42773 168 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 DCAF7P61962 342 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 RNF4P78317 190 aa10.75□□□□□ -0.69
SCN9A-204ENST00000452182 EXOSC7Q15024 291 aaKnown RBP10.75□□□□□ -0.69
SCN9A-204ENST00000452182 EBPQ15125 230 aaKnown RBP10.75□□□□□ -0.69
SCN9A-204ENST00000452182 ZNF621Q6ZSS3 439 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms