RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 SNX11Q9Y5W9 270 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 C5orf58C9J3I9 102 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ALX3O95076 343 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 APBB3O95704 486 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 UQCRC2P22695 453 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 MAGEA2P43356 314 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 CHRNEQ04844 493 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 SLAMF1Q13291 335 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PROX2Q3B8N5 592 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 TOR1AIP1Q5JTV8 583 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 SNAP47Q5SQN1 464 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 UBE3DQ7Z6J8 389 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 GALNT12Q8IXK2 581 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ATG16L2Q8NAA4 619 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ZBED6CLQ96FA7 236 aaPredicted RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 Q96MT0 163 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 DOHHQ9BU89 302 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 OR51E2Q9H255 320 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 KIR3DX1Q9H7L2 352 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 TM9SF3Q9HD45 589 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 KRT84Q9NSB2 600 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 OR6C2Q9NZP2 312 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 RAB23Q9ULC3 237 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PRR19A6NJB7 356 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 CENPXA8MT69 81 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 TNFRSF21O75509 655 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PTGER1P34995 402 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 SLC19A1P41440 591 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 DSTNP60981 165 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ALG11Q2TAA5 492 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PRRT3Q5FWE3 981 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ZNF793Q6ZN11 406 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ENTHD1Q8IYW4 607 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 OR13H1Q8NG92 308 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 TOE1Q96GM8 510 aaKnown RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 KCNC2Q96PR1 638 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 SDHCQ99643 169 aaPredicted RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PLSCR3Q9NRY6 295 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 RPLP0P05388 317 aaKnown RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 F3P13726 295 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 RPP38P78345 283 aaKnown RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 SLC46A3Q7Z3Q1 461 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 KBTBD8Q8NFY9 601 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PATE1Q8WXA2 126 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 OR5P2Q8WZ92 322 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 FCGR1BQ92637 280 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 RAB8BQ92930 207 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ST6GAL2Q96JF0 529 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 BBS4Q96RK4 519 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 FAIM2Q9BWQ8 316 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 GPR174Q9BXC1 333 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 DDX31Q9H8H2 851 aaKnown RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 NEUROD4Q9HD90 331 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 AMBNQ9NP70 447 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 C1GALT1Q9NS00 363 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ERVK13-1Q9NX77 482 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 CCDC59Q9P031 241 aaKnown RBP13.37□□□□□ -0.27
LIMD1-202ENST00000440097 SNX7Q9UNH6 387 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 PEX16Q9Y5Y5 336 aa13.37□□□□□ -0.27
LIMD1-202ENST00000440097 ARHGEF17Q96PE2 2063 aaPredicted RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 ALPPL2P10696 532 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 POLR2CP19387 275 aaPredicted RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 DNAJA1P31689 397 aaKnown RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 PRKAG1P54619 331 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 SELENOWP63302 87 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 TMEM35AQ53FP2 167 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 SPANXN2Q5MJ10 180 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 RLN3Q8WXF3 142 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 MS4A6EQ96DS6 147 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 NEDD4LQ96PU5 975 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 TTYH2Q9BSA4 534 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 CENPOQ9BU64 300 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 THUMPD1Q9NXG2 353 aaKnown RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 ANGPT4Q9Y264 503 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 MAU2Q9Y6X3 613 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 CCRL2O00421 344 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 GCM2O75603 506 aaPredicted RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 VIPP01282 170 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 BCHEP06276 602 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 HOXC4P09017 264 aaPredicted RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 HIST1H1TP22492 207 aaPredicted RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 CERS1P27544 350 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 RRM2P31350 389 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 BMP8BP34820 402 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 KCNJ10P78508 379 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 RBBP4Q09028 425 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 ZNF630Q2M218 657 aaPredicted RBP13.36□□□□□ -0.27
LIMD1-202ENST00000440097 NRARPQ7Z6K4 114 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 ACOT4Q8N9L9 421 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 OR52J3Q8NH60 311 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 CHCHD6Q9BRQ6 235 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 MKLN1Q9UL63 735 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 TBC1D24Q9ULP9 559 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 AP1M2Q9Y6Q5 423 aa13.36□□□□□ -0.27
LIMD1-202ENST00000440097 PRICKLE3O43900 615 aaPredicted RBP13.35□□□□□ -0.27
LIMD1-202ENST00000440097 C8orf89P0DMQ9 161 aa13.35□□□□□ -0.27
LIMD1-202ENST00000440097 FPR1P21462 350 aa13.35□□□□□ -0.27
LIMD1-202ENST00000440097 SLC15A1P46059 708 aa13.35□□□□□ -0.27
LIMD1-202ENST00000440097 NCBP2P52298 156 aaKnown RBP eCLIP13.35□□□□□ -0.27
LIMD1-202ENST00000440097 GALK2Q01415 458 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms