RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LRRC20Q8TCA0 184 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CHTF18Q8WVB6 975 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 BTN2A2Q8WVV5 523 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TRIM63Q969Q1 353 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 EPYCQ99645 322 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TREX2Q9BQ50 279 aaPredicted RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 ZNF559Q9BR84 538 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CHIAQ9BZP6 476 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CWH43Q9H720 699 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 RDH14Q9HBH5 336 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 MAT2BQ9NZL9 334 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZNF624Q9P2J8 865 aaPredicted RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 SLC13A4Q9UKG4 626 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 SNX7Q9UNH6 387 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZFR2Q9UPR6 939 aaKnown RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 CA5BQ9Y2D0 317 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 RWDD3Q9Y3V2 267 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GBF1Q92538 1859 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 LOC105369274A0A096LPK9 316 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 AGAP14A8MT82 685 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 SOD2P04179 222 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 RB1P06400 928 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 C1GALT1C1LP0DN25 315 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PTHLHP12272 177 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 HOXB9P17482 250 aaPredicted RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 MYL12AP19105 171 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ALAS2P22557 587 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ACVR2AP27037 513 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TAS2R41P59536 307 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GPLD1P80108 840 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 FCHO2Q0JRZ9 810 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PRAMEF14Q5SWL7 426 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PRAMEF13Q5VWM6 474 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 REEP3Q6NUK4 255 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CNIH2Q6PI25 160 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ARL9Q6T311 187 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 LIPIQ6XZB0 460 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZNF438Q7Z4V0 828 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ATCAYQ86WG3 371 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 OR4N4Q8N0Y3 316 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 YIPF7Q8N8F6 280 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 UXS1Q8NBZ7 420 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 LSM14AQ8ND56 463 aaKnown RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 OR52N2Q8NGI0 321 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZNF566Q969W8 418 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 RNFT2Q96EX2 444 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 C1QTNF6Q9BXI9 259 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 SAP130Q9H0E3 1048 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GPBP1L1Q9HC44 474 aaPredicted RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 SLC35C2Q9NQQ7 365 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 MCUBQ9NWR8 336 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TXNL4BQ9NX01 149 aaKnown RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 BTNL2Q9UIR0 455 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 FAM171A2A8MVW0 826 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GTPBP1O00178 669 aaKnown RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 SOCS6O14544 535 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GRM6O15303 877 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 RECKO95980 971 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 DRD5P21918 477 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ELAVL4P26378 380 aaKnown RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 KIR2DL3P43628 341 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 DUSP2Q05923 314 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 C6orf132Q5T0Z8 1188 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 KHDRBS2Q5VWX1 349 aaKnown RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 LIPJQ5W064 366 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GRHL2Q6ISB3 625 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PLET1Q6UQ28 207 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZNF730Q6ZMV8 503 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PLEKHM3Q6ZWE6 761 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZER1Q7Z7L7 766 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 LAPTM4BQ86VI4 370 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ANKRD53Q8N9V6 530 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 FIBINQ8TAL6 211 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TFGQ92734 400 aaPredicted RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 SNAPC3Q92966 411 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TMEM80Q96HE8 168 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PTGFRNQ9P2B2 879 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CFL2Q9Y281 166 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CMAHPQ9Y471 501 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 COL4A6Q14031 1691 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 NOTCH4Q99466 2003 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 A0A0B4J293 547 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 PRAMEF27A3QJZ7 478 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 C12orf71A8MTZ7 269 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 PDPK1O15530 556 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ERI3O43414 337 aaKnown RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 FCMRO60667 390 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 GPR37L1O60883 481 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 CSF3P09919 207 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SYN1P17600 705 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 XCR1P46094 333 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ASMTP46597 345 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OR10A3P58181 314 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ERVFC1P60507 584 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 CSNK2BP67870 215 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 C1DQ13901 141 aaKnown RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 LARS2Q15031 903 aaKnown RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 GPR68Q15743 365 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 NDUFA5Q16718 116 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 LHX8Q68G74 356 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms