RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HPCAP84074 193 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 FADDQ13158 208 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CLN3Q13286 438 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 LTB4RQ15722 352 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ZSCAN26Q16670 478 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 PAGE3Q5JUK9 113 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 LRIF1Q5T3J3 769 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 C6orf120Q7Z4R8 191 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 VASH2Q86V25 355 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 KBTBD2Q8IY47 623 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR2L13Q8N349 312 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 TMEM102Q8N9M5 508 aaPredicted RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 CDRT4Q8N9R6 151 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR52R1Q8NGF1 315 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR8J3Q8NGG0 315 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR5AK3PQ8NH89 298 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 SUN3Q8TAQ9 357 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 M1APQ8TC57 530 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 C8orf44Q96CB5 159 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 FAM120BQ96EK7 910 aaKnown RBP9.42□□□□□ -0.9
CD44-207ENST00000425428 DCBLD2Q96PD2 775 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 PHF12Q96QT6 1004 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 SPATA9Q9BWV2 254 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 ACTRT3Q9BYD9 372 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 CXorf36Q9H7Y0 433 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 P4HTMQ9NXG6 502 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 OR10H1Q9Y4A9 318 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 HS3ST3B1Q9Y662 390 aa9.42□□□□□ -0.9
CD44-207ENST00000425428 C2orf92A0A1B0GVN3 265 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 TMEM8BA6NDV4 472 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 C5orf58C9J3I9 102 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 FBP2O00757 339 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 SCN2BO60939 215 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 ZFP36L2P47974 494 aaKnown RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 PSME3P61289 254 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 FUT7Q11130 342 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 BNIP1Q12981 228 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 AIMP2Q13155 320 aaKnown RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 CYP51A1Q16850 503 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 MPEG1Q2M385 716 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 CRTC2Q53ET0 693 aaPredicted RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 TRMT12Q53H54 448 aaKnown RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 PLAG1Q6DJT9 500 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 JMJD6Q6NYC1 403 aaPredicted RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 FAM111BQ6SJ93 734 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 KIRREL2Q6UWL6 708 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 C6orf89Q6UWU4 347 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 MRGPREQ86SM8 312 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 SLC30A8Q8IWU4 369 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 PGAM4Q8N0Y7 254 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 TAGAPQ8N103 731 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 SLC5A8Q8N695 610 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 OR11G2Q8NGC1 345 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 PTPMT1Q8WUK0 201 aaPredicted RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 NUDT8Q8WV74 236 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 SLC9A6Q92581 669 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 NCLNQ969V3 563 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 NEURL3Q96EH8 262 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 ANKRD27Q96NW4 1050 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 GAL3ST4Q96RP7 486 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 BTBD10Q9BSF8 475 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 PAIP1Q9H074 479 aaKnown RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 TRIM45Q9H8W5 580 aaPredicted RBP9.41□□□□□ -0.9
CD44-207ENST00000425428 ZNF160Q9HCG1 818 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 Q9N2J8 555 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 SLAMF7Q9NQ25 335 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 IL17BQ9UHF5 180 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 FBXL4Q9UKA2 621 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 WASF3Q9UPY6 502 aa9.41□□□□□ -0.9
CD44-207ENST00000425428 IGHV3-20A0A0C4DH32 117 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 TRBV11-1A0A0K0K1C0 115 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 UPK1AO00322 258 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 GSTA4O15217 222 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 AK1P00568 194 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 SLC26A5P58743 744 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 MRPS22P82650 360 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 CAPRIN1Q14444 709 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 LASP1Q14847 261 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 MYBPC3Q14896 1274 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 EXOSC7Q15024 291 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 SPATS1Q496A3 300 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 RUNDC3AQ59EK9 446 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 SAMD4BQ5PRF9 694 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 ERICH5Q6P6B1 374 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 BNC2Q6ZN30 1099 aaPredicted RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 ZNF771Q7L3S4 317 aaPredicted RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 C16orf62Q7Z3J2 963 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 PPP1R32Q7Z5V6 425 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 YTHDF3Q7Z739 585 aaKnown RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 DEFB107AQ8IZN7 70 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 COX18Q8N8Q8 333 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 OR7G2Q8NG99 324 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 OR8K3Q8NH51 312 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 SLC22A8Q8TCC7 542 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 GPR151Q8TDV0 419 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 ZFP90Q8TF47 636 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 CTHRC1Q96CG8 243 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 MMADHCQ9H3L0 296 aaPredicted RBP9.4□□□□□ -0.9
CD44-207ENST00000425428 SERHLQ9NQF3 203 aa9.4□□□□□ -0.9
CD44-207ENST00000425428 CALML5Q9NZT1 146 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms