RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FAM183AA6NL82 134 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 HSD3B1P14060 373 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 HSD3B2P26439 372 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 BUD31P41223 144 aaPredicted RBP19.81■□□□□ 0.76
CTCF-202ENST00000401394 TEKQ02763 1124 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 WSCD2Q2TBF2 565 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 MTFR2Q6P444 385 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 ANKRD53Q8N9V6 530 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 SLC5A11Q8WWX8 675 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TBX5Q99593 518 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 SIRT3Q9NTG7 399 aaPredicted RBP19.81■□□□□ 0.76
CTCF-202ENST00000401394 DYRK1BQ9Y463 629 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TMPRSS11DO60235 418 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 LIMS3P0CW19 117 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 LIMS4P0CW20 117 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TFPIP10646 304 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 IRS1P35568 1242 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TRIQKQ629K1 86 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 SLC30A6Q6NXT4 461 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 FAM83HQ6ZRV2 1179 aaPredicted RBP19.81■□□□□ 0.76
CTCF-202ENST00000401394 C19orf18Q8NEA5 215 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 HCAR2Q8TDS4 363 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TRMT2BQ96GJ1 504 aaKnown RBP19.81■□□□□ 0.76
CTCF-202ENST00000401394 MAP6Q96JE9 813 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 MYNNQ9NPC7 610 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TM7SF3Q9NS93 570 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 TEKT2Q9UIF3 430 aa19.81■□□□□ 0.76
CTCF-202ENST00000401394 AKAP8O43823 692 aaKnown RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 RAB36O95755 333 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 C8orf89P0DMQ9 161 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 CPEP16870 476 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 RPS5P46782 204 aaKnown RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 ZNF57Q68EA5 555 aaPredicted RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 CACUL1Q86Y37 369 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 DOK4Q8TEW6 326 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 TCEAL4Q96EI5 215 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 GPR55Q9Y2T6 319 aaPredicted RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 TEX28O15482 410 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 UQCRC2P22695 453 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 IL12RB1P42701 662 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 MAPK12P53778 367 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 LCN1P1Q5VSP4 162 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 NXPE4Q6UWF7 544 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 OR4M2Q8NGB6 313 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 ZNF717Q9BY31 904 aaPredicted RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 SLA2Q9H6Q3 261 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 PPP1R3EQ9H7J1 279 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 BACE2Q9Y5Z0 518 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 IL1AP01583 271 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 SRP9P49458 86 aaKnown RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 GZMKP49863 264 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 WNT4P56705 351 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 KCNC3Q14003 757 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 FAM181AQ8N9Y4 354 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 TM4SF18Q96CE8 201 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 RIPOR3Q96MK2 946 aa19.8■□□□□ 0.76
CTCF-202ENST00000401394 TRIM45Q9H8W5 580 aaPredicted RBP19.8■□□□□ 0.76
CTCF-202ENST00000401394 H7BY64 318 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 OR2B3O76000 313 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 CRYZL1O95825 349 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 CST5P28325 142 aaPredicted RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 VIPR1P32241 457 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 KCNJ5P48544 419 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 ZNF284Q2VY69 593 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 TMEM201Q5SNT2 666 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 SDE2Q6IQ49 451 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 PRICKLE2Q7Z3G6 844 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 MARCH9Q86YJ5 346 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 FOPNLQ96NB1 174 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 PRAP1Q96NZ9 151 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 FNDC11Q9BVV2 318 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 PPIL3Q9H2H8 161 aaKnown RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 OR51I1Q9H343 314 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 TAC3Q9UHF0 121 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 DIMT1Q9UNQ2 313 aaKnown RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 MGAT4BQ9UQ53 548 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 EYSQ5T1H1 3165 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 TRAV6A0A075B6T7 132 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 LYRM1O43325 122 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 HOXB3P14651 431 aaPredicted RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 MYL12AP19105 171 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 FUT1P19526 365 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 CSTF1Q05048 431 aaKnown RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 FAM205BPQ63HN1 556 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 SLC9B2Q86UD5 537 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 ADIPOR2Q86V24 386 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 GRPEL2Q8TAA5 225 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 ZFAND1Q8TCF1 268 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 FAM46AQ96IP4 442 aaKnown RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 QRFPRQ96P65 431 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 ISG20L2Q9H9L3 353 aaKnown RBP19.79■□□□□ 0.76
CTCF-202ENST00000401394 UCKL1Q9NWZ5 548 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 REV3LO60673 3130 aa19.79■□□□□ 0.76
CTCF-202ENST00000401394 OLFM2O95897 454 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 ENPP1P22413 925 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 XPAP23025 273 aaPredicted RBP19.78■□□□□ 0.76
CTCF-202ENST00000401394 PRLHRP49683 370 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 STXBP1P61764 594 aaKnown RBP19.78■□□□□ 0.76
CTCF-202ENST00000401394 MEDAGQ5VYS4 303 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 AMIGO1Q86WK6 493 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms