RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CRABP1P29762 137 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CTHP32929 405 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 NIPAL4Q0D2K0 466 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PHC2Q8IXK0 858 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 Q8N402 240 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 METTL25Q8N6Q8 603 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 NPLOC4Q8TAT6 608 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SLC25A44Q96H78 314 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 PFDN5Q99471 154 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 MTHFD2LQ9H903 347 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 RLIMQ9NVW2 624 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 WRAP73Q9P2S5 460 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 FTSJ1Q9UET6 329 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TMEM59LQ9UK28 342 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ASB4Q9Y574 426 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PCDHGA8Q9Y5G5 932 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 A0A1W2PP55 124 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SMAD9O15198 467 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 MPPED1O15442 326 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 RFPL1O75677 317 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 IL7P13232 177 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CD34P28906 385 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 FAM69BQ5VUD6 431 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 KANK2Q63ZY3 851 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ZNF852Q6ZMS4 543 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 DNAJC22Q8N4W6 341 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 MINDY1Q8N5J2 469 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ACBD7Q8N6N7 88 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PAPD5Q8NDF8 572 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 TBC1D15Q8TC07 691 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ZDHHC1Q8WTX9 485 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ISOC1Q96CN7 298 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SIGLEC10Q96LC7 697 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 USB1Q9BQ65 265 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 GPR174Q9BXC1 333 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ACTRT3Q9BYD9 372 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR2B2Q9GZK3 357 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CNOT11Q9UKZ1 510 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 ENTPD2Q9Y5L3 495 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 A0A0D9SEW6 157 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 NOTOA8MTQ0 251 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 A8MVJ9 347 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 D6RAR5 112 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SOCS2O14508 198 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 UBL4AP11441 157 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 FGF3P11487 239 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 FUT4P22083 530 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CHRNB4P30926 498 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 HOXA9P31269 272 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 APLNRP35414 380 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR1E2P47887 323 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SLC9A3P48764 834 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 MLLT10P55197 1068 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CDH15P55291 814 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 RNASE10Q5GAN6 216 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 LIPKQ5VXJ0 399 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 LRFN4Q6PJG9 635 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ZNF704Q6ZNC4 412 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 WDR53Q7Z5U6 358 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 CCDC28AQ8IWP9 274 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ELMOD2Q8IZ81 293 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CMTM1Q8IZ96 169 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PHTF2Q8N3S3 785 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ENDOVQ8N8Q3 282 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 GATSQ8NAP1 163 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ZBTB8BQ8NAP8 495 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR6C4Q8NGE1 309 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 C7orf50Q9BRJ6 194 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 CCDC106Q9BWC9 280 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 MGAT4CQ9UBM8 478 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 AJAP1Q9UKB5 411 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 SLC6A5Q9Y345 797 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 LTBP3Q9NS15 1303 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 TRAPPC13A5PLN9 417 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 POLR1CO15160 346 aaPredicted RBP6.16□□□□□ -1.42
UPF2-201ENST00000356352 UGDHO60701 494 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 SLC16A8O95907 504 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 FDXRP22570 491 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 PRKACGP22612 351 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 NTSR1P30989 418 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 NAA10P41227 235 aaPredicted RBP6.16□□□□□ -1.42
UPF2-201ENST00000356352 PITPNBP48739 271 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 CAMLGP49069 296 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 NR0B1P51843 470 aaKnown RBP6.16□□□□□ -1.42
UPF2-201ENST00000356352 AKR1C2P52895 323 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 CLDN8P56748 225 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 MEF2AQ02078 507 aaPredicted RBP6.16□□□□□ -1.42
UPF2-201ENST00000356352 CREB5Q02930 508 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 TBRG1Q3YBR2 411 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 GARNL3Q5VVW2 1013 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 AWAT2Q6E213 333 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 CYS1Q717R9 158 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 VTCN1Q7Z7D3 282 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 TSPAN33Q86UF1 283 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.16□□□□□ -1.42
UPF2-201ENST00000356352 LILRB2Q8N423 598 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 TXNDC5Q8NBS9 432 aaKnown RBP6.16□□□□□ -1.42
UPF2-201ENST00000356352 OR9I1Q8NGQ6 314 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 SCRN2Q96FV2 425 aa6.16□□□□□ -1.42
UPF2-201ENST00000356352 MAELQ96JY0 434 aaKnown RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms