RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 RPS3AP61247 264 aaKnown RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3GQ6DHY5 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3CQ6IPX1 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 ZNF425Q6IV72 752 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TMEM64Q6YI46 380 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 LSRQ86X29 649 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 MEX3DQ86XN8 651 aaKnown RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3Q8IZP1 549 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TCEANCQ8N8B7 351 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 KCT2Q8NC54 265 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 MORN4Q8NDC4 146 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 OR4E2Q8NGC2 313 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 RNF217Q8TC41 542 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 SARGQ9BW04 601 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 NXF2Q9GZY0 626 aaKnown RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 MMP27Q9H306 513 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CD93Q9NPY3 652 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 POLE4Q9NR33 117 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 DZANK1Q9NVP4 752 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 ZSCAN32Q9NX65 697 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CA5BQ9Y2D0 317 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TICRRQ7Z2Z1 1910 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 PROM1O43490 865 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 PIPP12273 146 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CKMT1AP12532 417 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 F3P13726 295 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 AK4P27144 223 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 PPP2R1BP30154 601 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 KHKP50053 298 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 LBX1P52954 281 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TMEM201Q5SNT2 666 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TPRG1LQ5T0D9 272 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 SLC48A1Q6P1K1 146 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 NUDT18Q6ZVK8 323 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 KRT73Q86Y46 540 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CYP4Z2PQ8N1L4 340 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 C9orf43Q8TAL5 461 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 ELSPBP1Q96BH3 223 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 SCARF2Q96GP6 870 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TAPBPLQ9BX59 468 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 C6orf62Q9GZU0 229 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 C6orf106Q9H6K1 298 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 POLMQ9NP87 494 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TRNAU1APQ9NX07 287 aaKnown RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 LSM2Q9Y333 95 aaKnown RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 KLK4Q9Y5K2 254 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 SCN2AQ99250 2005 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 A0A1W2PQF6 199 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 PRSS38A1L453 326 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 H0Y8X5 98 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 SLITRK5O94991 958 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 NTN1O95631 604 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 LAMP2P13473 410 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 CDH3P22223 829 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 CD40LGP29965 261 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 BUD31P41223 144 aaPredicted RBP14.53□□□□□ -0.08
UPF3B-202ENST00000345865 MC3RP41968 323 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 PPP5CP53041 499 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 OLR1P78380 273 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 ABATP80404 500 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 CD300CQ08708 224 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 SHHQ15465 462 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 VN1R4Q7Z5H5 301 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 OR4K5Q8NGD3 323 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 OR9A2Q8NGT5 310 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 CCL4L1Q8NHW4 92 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 ZNF681Q96N22 645 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 OPALINQ96PE5 141 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 FNDC11Q9BVV2 318 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 ISM1B1AKI9 464 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 FRS3O43559 492 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 PRKYO43930 277 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 DNTTP04053 509 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 ASGR2P07307 311 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 LTB4RQ15722 352 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 INAVAQ3KP66 663 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 ACSM5Q6NUN0 579 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 IQCHQ86VS3 1027 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 MFSD9Q8NBP5 474 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 BBS10Q8TAM1 723 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 ANKHQ9HCJ1 492 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 HHATLQ9HCP6 504 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 EQTNQ9NQ60 294 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 IRAK4Q9NWZ3 460 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 GPR55Q9Y2T6 319 aaPredicted RBP14.53□□□□□ -0.08
UPF3B-202ENST00000345865 CHST2Q9Y4C5 530 aa14.53□□□□□ -0.08
UPF3B-202ENST00000345865 TRBV23OR9-2A0A075B6M9 112 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 AGAP5A6NIR3 686 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 BTN3A3O00478 584 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 KIAA0513O60268 411 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 GPX5O75715 221 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 ZIC2O95409 532 aaPredicted RBP14.52□□□□□ -0.08
UPF3B-202ENST00000345865 CHRM5P08912 532 aaPredicted RBP14.52□□□□□ -0.08
UPF3B-202ENST00000345865 TNFRSF4P43489 277 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 ZNF91Q05481 1191 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 GPAT3Q53EU6 434 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 ANKRD54Q6NXT1 300 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 PAQR6Q6TCH4 344 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 FAM92BQ6ZTR7 304 aa14.52□□□□□ -0.08
UPF3B-202ENST00000345865 IL17RCQ8NAC3 791 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms