RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF805Q5CZA5 627 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 DNM1P34Q6PK57 102 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 DCUN1D3Q8IWE4 304 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 METTL21AQ8WXB1 218 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 NSMAFQ92636 917 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MS4A4AQ96JQ5 239 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 ACSL6Q9UKU0 697 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 ABCA3Q99758 1704 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 MYH15Q9Y2K3 1946 aa10.98□□□□□ -0.65
VPS39-201ENST00000318006 LOC285095A0A1B0GVY8 99 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TRAPPC13A5PLN9 417 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 HSPA12AO43301 675 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ZNF821O75541 412 aaPredicted RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 GSRP00390 522 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PDYNP01213 254 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 FUCA1P04066 466 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ZNF8P17098 575 aaPredicted RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 CPOXP36551 454 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 LASP1Q14847 261 aaKnown RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 TATDN3Q17R31 274 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PSAPL1Q6NUJ1 521 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ZNF529Q6P280 563 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 HMGB4Q8WW32 186 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 MUL1Q969V5 352 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 LRIG1Q96JA1 1093 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 DHRS1Q96LJ7 313 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 UNKLQ9H9P5 680 aaKnown RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 RANGRFQ9HD47 186 aaPredicted RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 ASF1BQ9NVP2 202 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 CLDND1Q9NY35 253 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PAPPAQ13219 1627 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 CACNA1SQ13698 1873 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 MYO5AQ9Y4I1 1855 aaKnown RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 A0A1W2PPK0 400 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 SGCEO43556 437 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ALDOBP05062 364 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 THEGLP0DJG4 465 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 BMP4P12644 408 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TNFSF8P32971 234 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 CD68P34810 354 aaPredicted RBP10.97□□□□□ -0.65
VPS39-201ENST00000318006 CDKN2DP55273 166 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ODF4Q2M2E3 257 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PAGE3Q5JUK9 113 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 LIPJQ5W064 366 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 CCDC54Q8NEL0 328 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 OR13F1Q8NGS4 319 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 RIT1Q92963 219 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TRIB3Q96RU7 358 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TTTY10Q9BZA0 68 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 POT1Q9NUX5 634 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ELOVL2Q9NXB9 296 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TMEM98Q9Y2Y6 226 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PCDHB14Q9Y5E9 798 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 NAP1L6A6NFF2 107 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ZBTB42B2RXF5 422 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 SFTPBP07988 381 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 UCHL1P09936 223 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ITGAMP11215 1152 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 FDXRP22570 491 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ACRV1P26436 265 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PTPN6P29350 595 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 CD6P30203 668 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 PLAG1Q6DJT9 500 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 GALNT7Q86SF2 657 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 SCD5Q86SK9 330 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 BEST4Q8NFU0 473 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 NETO1Q8TDF5 533 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 LAMP5Q9UJQ1 280 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 SLC22A31A6NKX4 558 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 SOX30O94993 753 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 GCAP28676 217 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 HMGCLP35914 325 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ACVR1BP36896 505 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 WNT4P56705 351 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 MC2RQ01718 297 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 CLLU1OSQ5K130 101 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 ALG1LQ6GMV1 187 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 RPL13AP3Q6NVV1 102 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TMPRSS12Q86WS5 348 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 OR5P2Q8WZ92 322 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 TMEM41AQ96HV5 264 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 KCNK6Q9Y257 313 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 OARD1Q9Y530 152 aa10.97□□□□□ -0.65
VPS39-201ENST00000318006 LOC105369274A0A096LPK9 316 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 SULT1C2O00338 296 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 NDUFS4O43181 175 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 SSX5O60225 188 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 CDK1P06493 297 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 FGF4P08620 206 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ALPPL2P10696 532 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 IL12BP29460 328 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ETV3P41162 512 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 RGS6P49758 472 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 ENPP2Q13822 863 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 TBCEQ15813 527 aaPredicted RBP10.96□□□□□ -0.65
VPS39-201ENST00000318006 OR4N4Q8N0Y3 316 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 TTC9BQ8N6N2 239 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 OR8K3Q8NH51 312 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 SARDHQ9UL12 918 aa10.96□□□□□ -0.65
VPS39-201ENST00000318006 WDR45Q9Y484 360 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms