RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MC3RP41968 323 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 TNFRSF4P43489 277 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 ABATP80404 500 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 LTB4RQ15722 352 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 TMEM31Q5JXX7 168 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 ZNF425Q6IV72 752 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 MAN2C1Q9NTJ4 1040 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 ZSCAN32Q9NX65 697 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 ARHGEF17Q96PE2 2063 aaPredicted RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 MPZL2O60487 215 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 CNOT3O75175 753 aaKnown RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 TP53P04637 393 aaPredicted RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 CHRM5P08912 532 aaPredicted RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 F3P13726 295 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 TRIM16LQ309B1 348 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 TJAP1Q5JTD0 557 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 SLX4IPQ5VYV7 408 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 SLC48A1Q6P1K1 146 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 ENPP7Q6UWV6 458 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 LINC00299Q6ZSB3 139 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 CLIP4Q8N3C7 705 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 LCN9Q8WX39 176 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 C1QTNF7Q9BXJ2 289 aa18.9■□□□□ 0.62
VPS53-201ENST00000291074 C6orf106Q9H6K1 298 aaPredicted RBP18.9■□□□□ 0.62
VPS53-201ENST00000291074 DSCR3O14972 297 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 FRS3O43559 492 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 KLF8O95600 359 aaPredicted RBP18.89■□□□□ 0.62
VPS53-201ENST00000291074 EGFP01133 1207 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 SLC15A1P46059 708 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 BTN3A2P78410 334 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 TSTQ16762 297 aaKnown RBP18.89■□□□□ 0.62
VPS53-201ENST00000291074 PLAG1Q6DJT9 500 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 TMEM64Q6YI46 380 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 AMIGO1Q86WK6 493 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 MFSD9Q8NBP5 474 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 BBS10Q8TAM1 723 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 KAT2AQ92830 837 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 TSACCQ96A04 125 aaPredicted RBP18.89■□□□□ 0.62
VPS53-201ENST00000291074 FAM131CQ96AQ9 280 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 CDCA3Q99618 268 aaPredicted RBP18.89■□□□□ 0.62
VPS53-201ENST00000291074 GPA33Q99795 319 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 FNDC11Q9BVV2 318 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 CDCA4Q9BXL8 241 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 SLC25A19Q9HC21 320 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 PCDHGA3Q9Y5H0 932 aa18.89■□□□□ 0.62
VPS53-201ENST00000291074 FANCMQ8IYD8 2048 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 METTL15A6NJ78 407 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 MMP11P24347 488 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 MAGEA8P43361 318 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 FBXO43Q4G163 708 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 ATAT1Q5SQI0 421 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 VN1R4Q7Z5H5 301 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 IQCHQ86VS3 1027 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 TCEANCQ8N8B7 351 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 ZG16BQ96DA0 208 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 SLC6A18Q96N87 628 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 GABRG3Q99928 467 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 KIR3DX1Q9H7L2 352 aa18.89■□□□□ 0.61
VPS53-201ENST00000291074 CNOT2Q9NZN8 540 aaKnown RBP18.89■□□□□ 0.61
VPS53-201ENST00000291074 NTN1O95631 604 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 CKMT1AP12532 417 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 UGT2B10P36537 528 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 RPS3AP61247 264 aaKnown RBP18.88■□□□□ 0.61
VPS53-201ENST00000291074 ZNF404Q494X3 552 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 C12orf73Q69YU5 71 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 ZNF367Q7RTV3 350 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 ZER1Q7Z7L7 766 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 OR4K5Q8NGD3 323 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 CRELD1Q96HD1 420 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 Q96MT0 163 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 OR7D2Q96RA2 312 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 MGLLQ99685 303 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 C6orf62Q9GZU0 229 aaPredicted RBP18.88■□□□□ 0.61
VPS53-201ENST00000291074 LMAN2LQ9H0V9 348 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 ZNF624Q9P2J8 865 aaPredicted RBP18.88■□□□□ 0.61
VPS53-201ENST00000291074 CLEC2DQ9UHP7 191 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 SLC9A8Q9Y2E8 581 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 PROM1O43490 865 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 FHP07954 510 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 CSNK2A2P19784 350 aaPredicted RBP18.88■□□□□ 0.61
VPS53-201ENST00000291074 RAB15P59190 212 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 DLX2Q07687 328 aaPredicted RBP18.88■□□□□ 0.61
VPS53-201ENST00000291074 CASP12Q6UXS9 341 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 USP43Q70EL4 1123 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 SFXN5Q8TD22 340 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 SCARF2Q96GP6 870 aaPredicted RBP18.88■□□□□ 0.61
VPS53-201ENST00000291074 BCL2L10Q9HD36 194 aa18.88■□□□□ 0.61
VPS53-201ENST00000291074 A0A1W2PRQ8 180 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 LGI1O95970 557 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 MAN2A2P49641 1150 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 BCAP31P51572 246 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 TFF2Q03403 129 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 OXA1LQ15070 435 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 C1QTNF12Q5T7M4 302 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 SDE2Q6IQ49 451 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 SARGQ9BW04 601 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 POLE4Q9NR33 117 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 TVP23BQ9NYZ1 205 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 COLEC10Q9Y6Z7 277 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 KCNJ13O60928 360 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms