RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PACS2Q86VP3 889 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 ST13P4Q8IZP2 240 aaPredicted RBP17.25■□□□□ 0.35
CLN3-254ENST00000637050 EID3Q8N140 333 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 PQLC1Q8N2U9 271 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 SLC38A9Q8NBW4 561 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 PAPD5Q8NDF8 572 aaKnown RBP17.25■□□□□ 0.35
CLN3-254ENST00000637050 PPWD1Q96BP3 646 aaKnown RBP17.25■□□□□ 0.35
CLN3-254ENST00000637050 EFHD1Q9BUP0 239 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 YIPF2Q9BWQ6 316 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 ALOXE3Q9BYJ1 711 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 SLC7A5P2Q9GIP4 190 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 OR51I1Q9H343 314 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 C19orf53Q9UNZ5 99 aaPredicted RBP17.25■□□□□ 0.35
CLN3-254ENST00000637050 MMACHCQ9Y4U1 282 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 SCN2AQ99250 2005 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 GCM2O75603 506 aaPredicted RBP17.24■□□□□ 0.35
CLN3-254ENST00000637050 RFPL3O75679 317 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 SERPINA1P01009 418 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 MAOAP21397 527 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 GCKP35557 465 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 KHKP50053 298 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 ANXA11P50995 505 aaKnown RBP17.24■□□□□ 0.35
CLN3-254ENST00000637050 MC2RQ01718 297 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 BIKQ13323 160 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 LASP1Q14847 261 aaKnown RBP17.24■□□□□ 0.35
CLN3-254ENST00000637050 MYBPC3Q14896 1274 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 TRMT12Q53H54 448 aaKnown RBP17.24■□□□□ 0.35
CLN3-254ENST00000637050 ARHGAP40Q5TG30 622 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 DGAT2L6Q6ZPD8 337 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 COX15Q7KZN9 410 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 SLC30A8Q8IWU4 369 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 NFKBIDQ8NI38 313 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 FAM110BQ8TC76 370 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 MS4A4EQ96PG1 132 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 MKKSQ9NPJ1 570 aaPredicted RBP17.24■□□□□ 0.35
CLN3-254ENST00000637050 FBXO8Q9NRD0 319 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 SLC22A11Q9NSA0 550 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 C6orf203Q9P0P8 240 aaPredicted RBP17.24■□□□□ 0.35
CLN3-254ENST00000637050 AURKCQ9UQB9 309 aa17.24■□□□□ 0.35
CLN3-254ENST00000637050 OR2W5A6NFC9 320 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 OR10H2O60403 315 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 ONECUT2O95948 504 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 TFPTP0C1Z6 253 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 SESN3P58005 492 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 MAP4K2Q12851 820 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 SERTAD2Q14140 314 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.23■□□□□ 0.35
CLN3-254ENST00000637050 TBCELQ5QJ74 424 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 INTS11Q5TA45 600 aaKnown RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 QSOX2Q6ZRP7 698 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 CCDC80Q76M96 950 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 PIP4P1Q86T03 277 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 ZC3H7AQ8IWR0 971 aaKnown RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 LILRA2Q8N149 483 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 FAM86B1Q8N7N1 296 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 FBXO30Q8TB52 745 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 SLC38A5Q8WUX1 472 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 RAB8BQ92930 207 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 CLIP3Q96DZ5 547 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 C16orf58Q96GQ5 468 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 RBM18Q96H35 190 aaKnown RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 MYCBPQ99417 103 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 CXorf21Q9HAI6 301 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 NECTIN3Q9NQS3 549 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 POLR1CO15160 346 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 GDF9O60383 454 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 FOXD2O60548 495 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 CT62P0C5K7 136 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 OR12D1P0DN82 309 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 GALNSP34059 522 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 RORAP35398 523 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 STT3AP46977 705 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 PTDSS1P48651 473 aaKnown RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 MAN2A2P49641 1150 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 GTF2A1P52655 376 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 CRYBA2P53672 197 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 MAPK10P53779 464 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 INSM1Q01101 510 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 MAPK11Q15759 364 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 LRRC23Q53EV4 343 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 ZNF385CQ66K41 422 aaPredicted RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 MFSD12Q6NUT3 480 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 ENPP6Q6UWR7 440 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 LGI4Q8N135 537 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 SIMC1Q8NDZ2 872 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 OR5D16Q8NGK9 328 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 NRG4Q8WWG1 115 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 PELOQ9BRX2 385 aaKnown RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 UGT2B28Q9BY64 529 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 ACTRT3Q9BYD9 372 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 ZNF639Q9UID6 485 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 RIMS3Q9UJD0 308 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 SAMD4AQ9UPU9 718 aaKnown RBP17.23■□□□□ 0.35
CLN3-254ENST00000637050 ANGPT4Q9Y264 503 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 PCDHGA1Q9Y5H4 931 aa17.23■□□□□ 0.35
CLN3-254ENST00000637050 IGLV3-12A0A075B6K2 115 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 IGKV3D-11A0A0A0MRZ8 115 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 HNRNPRO43390 633 aaKnown RBP17.22■□□□□ 0.35
CLN3-254ENST00000637050 ASNA1O43681 348 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 PRKD3O94806 890 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms