RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TARDBPQ13148 414 aaKnown RBP eCLIP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 PRAMEF17Q5VTA0 474 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 RBM12BQ8IXT5 1001 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 LRRC56Q8IYG6 542 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 GATSQ8NAP1 163 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 GTPBP1O00178 669 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 JRKO75564 520 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 PSMB9P28065 219 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 DCTP40126 519 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 GRM7Q14831 915 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 PRPF38BQ5VTL8 546 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 PAQR7Q86WK9 346 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 SETD9Q8NE22 299 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 COQ8BQ96D53 544 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 ALOXE3Q9BYJ1 711 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 SEMA6CQ9H3T2 930 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 PLCL2Q9UPR0 1127 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 WBP11Q9Y2W2 641 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 MRPS2Q9Y399 296 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 A0A087WXM4 84 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 IGKV1-8A0A0C4DH67 115 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 CCNB2O95067 398 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 GPX2P18283 190 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 PRPH2P23942 346 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 FMO3P31513 532 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 CSTF2P33240 577 aaKnown RBP eCLIP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 CLCN2P51788 898 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 COPZ1P61923 177 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 RBBP4Q09028 425 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 THAP5Q7Z6K1 395 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 GALNT12Q8IXK2 581 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 ZNF540Q8NDQ6 660 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 OR5M3Q8NGP4 307 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 BAHD1Q8TBE0 780 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 MRPS26Q9BYN8 205 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 FAM60AQ9NP50 221 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 C11orf16Q9NQ32 467 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 WNT1P04628 370 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 BNC1Q01954 994 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 EPS8Q12929 822 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 SLC38A5Q8WUX1 472 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 TMIGD2Q96BF3 282 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 DDX31Q9H8H2 851 aaKnown RBP14.82□□□□□ -0.04
CPSF1-213ENST00000620219 KCMF1Q9P0J7 381 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 GBF1Q92538 1859 aa14.82□□□□□ -0.04
CPSF1-213ENST00000620219 A0A1W2PS29 197 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 J3KTA2 159 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 NR1H2P55055 460 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 FBXW4P57775 412 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 GPR107Q5VW38 600 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 METTL21AQ8WXB1 218 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 CSF3RQ99062 836 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 LYVE1Q9Y5Y7 322 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 FAM186AA6NE01 2351 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 A0A1W2PPC1 479 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 FAM221BA6H8Z2 402 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 H3BSA7 217 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 REM1O75628 298 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 FPR1P21462 350 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 RPS7P62081 194 aaKnown RBP14.81□□□□□ -0.04
CPSF1-213ENST00000620219 ZNF605Q86T29 641 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 IQCHQ86VS3 1027 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 MEX3DQ86XN8 651 aaKnown RBP14.81□□□□□ -0.04
CPSF1-213ENST00000620219 GRHL3Q8TE85 626 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 GUCD1Q96NT3 240 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 ELF4Q99607 663 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-213ENST00000620219 H2AFY2Q9P0M6 372 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-213ENST00000620219 CDC14AQ9UNH5 594 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 KIF26AQ9ULI4 1882 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-213ENST00000620219 TOR1BO14657 336 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 NOS3P29474 1203 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 VN1R4Q7Z5H5 301 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 STX19Q8N4C7 294 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 RASSF5Q8WWW0 418 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 TFAP2CQ92754 450 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 RIT1Q92963 219 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 DNAJA3Q96EY1 480 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 MPP4Q96JB8 637 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 ALPK1Q96QP1 1244 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 CHCHD3Q9NX63 227 aaKnown RBP14.81□□□□□ -0.04
CPSF1-213ENST00000620219 ADAM29Q9UKF5 820 aa14.81□□□□□ -0.04
CPSF1-213ENST00000620219 HELZP42694 1942 aaKnown RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 LMO7DNF2Z398 122 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PRKNO60260 465 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PI4KAP42356 2102 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 SELENOWP63302 87 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PIN1Q13526 163 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CDK20Q8IZL9 346 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 C1GALT1Q9NS00 363 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CALML5Q9NZT1 146 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 XPNPEP2O43895 674 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PIAS2O75928 621 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 LIM2P55344 173 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 EXOC3L2Q2M3D2 409 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 RFX4Q33E94 735 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CMPK2Q5EBM0 449 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 SLC48A1Q6P1K1 146 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 AQP11Q8NBQ7 271 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 CNIH3Q8TBE1 160 aa14.8□□□□□ -0.04
CPSF1-213ENST00000620219 PIK3R3Q92569 461 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms