RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RAG2P55895 527 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 DCDC1P59894 354 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 S100A12P80511 92 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 SMAD3P84022 425 aaKnown RBP10.27□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF630Q2M218 657 aaPredicted RBP10.27□□□□□ -0.77
UPF3A-212ENST00000619079 PAQR6Q6TCH4 344 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 FGD2Q7Z6J4 655 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 SLC30A8Q8IWU4 369 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 THEM5Q8N1Q8 247 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 OXR1Q8N573 874 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 FAM26EQ8N5C1 309 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 SYT14Q8NB59 555 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 OR6M1Q8NGM8 313 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 CIDECQ96AQ7 238 aaPredicted RBP10.27□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF558Q96NG5 402 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 NLNQ9BYT8 704 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 ABCG8Q9H221 673 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 TMEM38AQ9H6F2 299 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 WASH6PQ9NQA3 447 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 PCDHB16Q9NRJ7 776 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 NUDT15Q9NV35 164 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 ARL15Q9NXU5 204 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 TRPM5Q9NZQ8 1165 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 SCML2Q9UQR0 700 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 CACNG2Q9Y698 323 aa10.27□□□□□ -0.77
UPF3A-212ENST00000619079 DNMT3AQ9Y6K1 912 aaPredicted RBP10.27□□□□□ -0.77
UPF3A-212ENST00000619079 H3BN98 237 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 J3KTA2 159 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 B3GAT3O94766 335 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TGM6O95932 706 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 PAHP00439 452 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CBSLP0DN79 551 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CR2P20023 1033 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CBSP35520 551 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ETV5P41161 510 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 GAB1Q13480 694 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CAMK2DQ13557 499 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 GPRC6AQ5T6X5 926 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TRIM40Q6P9F5 258 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ANGPTL8Q6UXH0 198 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TMIGD1Q6UXZ0 262 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 USP45Q70EL2 814 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TCEANCQ8N8B7 351 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 OR6C4Q8NGE1 309 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 OR2T4Q8NH00 348 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 FUBP3Q96I24 572 aaKnown RBP eCLIP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 COQ10AQ96MF6 247 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 POLDIP3Q9BY77 421 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CD93Q9NPY3 652 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 EMC3Q9P0I2 261 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 REV1Q9UBZ9 1251 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TESQ9UGI8 421 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 PRELID3BQ9Y3B1 194 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 KCNMB2Q9Y691 235 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 SMIM30A4D0T7 59 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 PRAMEF25A6NGN4 478 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 RNASET2O00584 256 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 INPPL1O15357 1258 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TSPAN3O60637 253 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 HLA-DPB1P04440 258 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 SLC11A1P49279 550 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 FABP5Q01469 135 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 FLI1Q01543 452 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CSTF1Q05048 431 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ACSM2AQ08AH3 577 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 RAB40BQ12829 278 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 COX10Q12887 443 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 LRRC32Q14392 662 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 GANABQ14697 944 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 NTRK2Q16620 822 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 LYPLAL1Q5VWZ2 237 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ACSM2BQ68CK6 577 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 SERPINA9Q86WD7 417 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CIR1Q86X95 450 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 OR52N2Q8NGI0 321 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CDC26Q8NHZ8 85 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 SP7Q8TDD2 431 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CXorf40BQ96DE9 158 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TMEM169Q96HH4 297 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 LINC00052Q96N35 136 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 TEFMQ96QE5 360 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 PAAF1Q9BRP4 392 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 THAP7Q9BT49 309 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF436Q9C0F3 470 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 FBXO44Q9H4M3 255 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CWH43Q9H720 699 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ZSCAN32Q9NX65 697 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 IL17CQ9P0M4 197 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 VPS29Q9UBQ0 182 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 EXTL2Q9UBQ6 330 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ANGPT4Q9Y264 503 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 EXOSC1Q9Y3B2 195 aaKnown RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 KLF2Q9Y5W3 355 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-212ENST00000619079 ACTL7AQ9Y615 435 aa10.26□□□□□ -0.77
UPF3A-212ENST00000619079 CHD7Q9P2D1 2997 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 TEX13CA0A0J9YWL9 993 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 FAAHO00519 579 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 B4GALT3O60512 393 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 KCNJ13O60928 360 aa10.25□□□□□ -0.77
UPF3A-212ENST00000619079 PROS1P07225 676 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms