RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ART5Q96L15 291 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 OR8D2Q9GZM6 311 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ATP13A2Q9NQ11 1180 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 SAR1AQ9NR31 198 aa18.36■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF223Q9UK11 482 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-211ENST00000618700 A0A1W2PRB8 838 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 FAM234BA2RU67 622 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 CLPSP04118 112 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 IL6P05231 212 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 EFNA1P20827 205 aaPredicted RBP18.35■□□□□ 0.53
UPF3A-211ENST00000618700 POLR2JP52435 117 aaKnown RBP18.35■□□□□ 0.53
UPF3A-211ENST00000618700 DGKQP52824 942 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF267Q14586 743 aaPredicted RBP18.35■□□□□ 0.53
UPF3A-211ENST00000618700 FHL5Q5TD97 284 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 FAM111BQ6SJ93 734 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 THSD4Q6ZMP0 1018 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 KBTBD2Q8IY47 623 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 ZNF321PQ8N8H1 164 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 OR1N1Q8NGS0 311 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 APOBEC4Q8WW27 367 aaKnown RBP18.35■□□□□ 0.53
UPF3A-211ENST00000618700 OR5P2Q8WZ92 322 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 ERP27Q96DN0 273 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 VMP1Q96GC9 406 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 CNPPD1Q9BV87 410 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 NMUR2Q9GZQ4 415 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 MRGBPQ9NV56 204 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 FAM120CQ9NX05 1096 aaKnown RBP18.35■□□□□ 0.53
UPF3A-211ENST00000618700 ERVK-19Q9WJR5 959 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 CACNA1GO43497 2377 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 MED13Q9UHV7 2174 aa18.35■□□□□ 0.53
UPF3A-211ENST00000618700 PLOD2O00469 737 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 PLOD3O60568 738 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 CBX7O95931 251 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 ITGB2P05107 769 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 PGRP06401 933 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 ITGAMP11215 1152 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 S100A3P33764 101 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 CDK9P50750 372 aaKnown RBP18.34■□□□□ 0.53
UPF3A-211ENST00000618700 MANFP55145 182 aaKnown RBP18.34■□□□□ 0.53
UPF3A-211ENST00000618700 AP2B1P63010 937 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 MRPS35P82673 323 aaKnown RBP18.34■□□□□ 0.53
UPF3A-211ENST00000618700 HSPB3Q12988 150 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 C6orf163Q5TEZ5 329 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 C19orf48Q6RUI8 117 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 MTERF4Q7Z6M4 381 aaKnown RBP18.34■□□□□ 0.53
UPF3A-211ENST00000618700 KIF2BQ8N4N8 673 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 PSMA8Q8TAA3 256 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 KAT2AQ92830 837 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 NUDT9Q9BW91 350 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 SLC52A3Q9NQ40 469 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 SIRT3Q9NTG7 399 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-211ENST00000618700 CCDC167Q9P0B6 97 aa18.34■□□□□ 0.53
UPF3A-211ENST00000618700 A0A087WV62 115 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 CEACAM4O75871 244 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 DNAJB5O75953 348 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 C6orf47O95873 294 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 CD1EP15812 388 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 SSTR4P31391 388 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 MC3RP41968 323 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 SLC37A1P57057 533 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 DUSP8Q13202 625 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 UBAP2LQ14157 1087 aaKnown RBP18.33■□□□□ 0.52
UPF3A-211ENST00000618700 TBR1Q16650 682 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 COL28A1Q2UY09 1125 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 TIGD2Q4W5G0 525 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 AGKQ53H12 422 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 TRMT12Q53H54 448 aaKnown RBP18.33■□□□□ 0.52
UPF3A-211ENST00000618700 ANXA8L1Q5VT79 327 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 JMJD6Q6NYC1 403 aaPredicted RBP18.33■□□□□ 0.52
UPF3A-211ENST00000618700 BORAQ6PGQ7 559 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 BLOC1S3Q6QNY0 202 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 TMEM107Q6UX40 140 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 MSANTD1Q6ZTZ1 278 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 CLECL1Q8IZS7 167 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 GALNT16Q8N428 558 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 ZNF615Q8N8J6 731 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 OR7G2Q8NG99 324 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 OR7G1Q8NGA0 311 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 ELP4Q96EB1 424 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 TRIM4Q9C037 500 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 LHPPQ9H008 270 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 NEUROD4Q9HD90 331 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 PTGFRNQ9P2B2 879 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 COPS7AQ9UBW8 275 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 ARL2BPQ9Y2Y0 163 aa18.33■□□□□ 0.52
UPF3A-211ENST00000618700 TRBV11-1A0A0K0K1C0 115 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 PRSS51A0A1B0GVH4 220 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 PSMG1O95456 288 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 CLCN2P51788 898 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 HBA1P69905 142 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 EXOSC7Q15024 291 aaKnown RBP18.32■□□□□ 0.52
UPF3A-211ENST00000618700 H3F3CQ6NXT2 135 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 GPR155Q7Z3F1 870 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 ANKRD46Q86W74 232 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 C9orf40Q8IXQ3 194 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 OR2L13Q8N349 312 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 SIMC1Q8NDZ2 872 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 VPS37AQ8NEZ2 397 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 OR8K3Q8NH51 312 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 PSMF1Q92530 271 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms