RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 HMGB1P1B2RPK0 211 aaPredicted RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 PYCARD-AS1I3L0S3 204 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 SLC25A12O75746 678 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 CRYABP02511 175 aaKnown RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 CLPSP04118 112 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 PRPS2P11908 318 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 DDX5P17844 614 aaKnown RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 SDC1P18827 310 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 S1PR1P21453 382 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 TACR1P25103 407 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 MGAT2Q10469 447 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 MAPKAPK3Q16644 382 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 SMU1Q2TAY7 513 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 PRR30Q53SZ7 412 aaPredicted RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 C6orf136Q5SQH8 315 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 IL20RBQ6UXL0 311 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 C16orf47Q6ZP98 133 aaPredicted RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 CYP4Z2PQ8N1L4 340 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 BCORP1Q8N888 145 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 ZNF615Q8N8J6 731 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 FNDC5Q8NAU1 212 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 GALNT11Q8NCW6 608 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 ADCY4Q8NFM4 1077 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 ZNF675Q8TD23 568 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 GRHL3Q8TE85 626 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 FAR1Q8WVX9 515 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 TP53INP1Q96A56 240 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 CTHRC1Q96CG8 243 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 ERP27Q96DN0 273 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 GAL3ST4Q96RP7 486 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 BARD1Q99728 777 aaKnown RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 WWTR1Q9GZV5 400 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 ACBD3Q9H3P7 528 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 REEP4Q9H6H4 257 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 TIMMDC1Q9NPL8 285 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 KLHL1Q9NR64 748 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 BCAP29Q9UHQ4 241 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 ZNF639Q9UID6 485 aa13.92□□□□□ -0.18
UPF1-202ENST00000594243 EIF3LQ9Y262 564 aaKnown RBP13.92□□□□□ -0.18
UPF1-202ENST00000594243 SPTA1P02549 2419 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 MYO1GB0I1T2 1018 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 KLRC4-KLRK1H3BQV0 150 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 TBX19O60806 448 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 SNNO75324 88 aaPredicted RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 SLITRK5O94991 958 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 BCKDHAP12694 445 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 NTSP30990 170 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 RPL3P39023 403 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 SOX3P41225 446 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 KCNC4Q03721 635 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 DUSP2Q05923 314 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 EBPQ15125 230 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 PDCD2Q16342 344 aaPredicted RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 TRMT12Q53H54 448 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 TTMPQ5BVD1 217 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 ZNF628Q5EBL2 1059 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 FAM111BQ6SJ93 734 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 GALNTL5Q7Z4T8 443 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 R3HCC1LQ7Z5L2 792 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 ZNF227Q86WZ6 799 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 DND1Q8IYX4 353 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 FAM9CQ8IZT9 166 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 TAGAPQ8N103 731 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 GFM2Q969S9 779 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 MTERF3Q96E29 417 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 ZNF764Q96H86 408 aaPredicted RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 TSSK3Q96PN8 268 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 PRODH2Q9UF12 536 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 BAIAP2L1Q9UHR4 511 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 EXO1Q9UQ84 846 aaKnown RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 NTNG1Q9Y2I2 539 aa13.91□□□□□ -0.18
UPF1-202ENST00000594243 KLF13Q9Y2Y9 288 aaPredicted RBP13.91□□□□□ -0.18
UPF1-202ENST00000594243 CAPN14A8MX76 684 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 SLCO1B7G3V0H7 640 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 KLF11O14901 512 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 NME2P1O60361 137 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 OR6B1O95007 311 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 LRATO95237 230 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 NME2P22392 152 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 NCBP2P52298 156 aaKnown RBP eCLIP13.9□□□□□ -0.18
UPF1-202ENST00000594243 EMX2Q04743 252 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 LTB4RQ15722 352 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 IL23RQ5VWK5 629 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 RTL4Q6ZR62 310 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 LRRC34Q8IZ02 419 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 LIX1Q8N485 282 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 GOLM1Q8NBJ4 401 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 C17orf47Q8NEP4 570 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 OR9A2Q8NGT5 310 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 C16orf52Q8NHV5 167 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 PPCDCQ96CD2 204 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 SGCZQ96LD1 299 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 TAAR6Q96RI8 345 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 HES7Q9BYE0 225 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 OLAHQ9NV23 265 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 PNPOQ9NVS9 261 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 SH3BP4Q9P0V3 963 aa13.9□□□□□ -0.18
UPF1-202ENST00000594243 TCP11X1B4DZS4 312 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 AKAP10O43572 662 aa13.89□□□□□ -0.19
UPF1-202ENST00000594243 JUNP05412 331 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms