RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SENP5Q96HI0 755 aaPredicted RBP8.64□□□□□ -1.03
VPS35-211ENST00000569950 CCDC115Q96NT0 180 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 IP6K3Q96PC2 410 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 INPP5KQ9BT40 448 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 TUBB6Q9BUF5 446 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 DUSP26Q9BV47 211 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 CCDC106Q9BWC9 280 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 DPY30Q9C005 99 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 SERHL2Q9H4I8 314 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 CXorf36Q9H7Y0 433 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MMP25Q9NPA2 562 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MIEF1Q9NQG6 463 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 TMEM45AQ9NWC5 275 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 SH3BP4Q9P0V3 963 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 SLAMF8Q9P0V8 285 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 POLHQ9Y253 713 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 PCNX3Q9H6A9 2034 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 A0A087WV62 115 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 K7EM74 188 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 UPK1AO00322 258 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 RNASET2O00584 256 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 NADKO95544 446 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 C6orf47O95873 294 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 PDGFAP04085 211 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 SERPINA7P05543 415 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 PGRP06401 933 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 KIR3DL1P43629 444 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 NCBP2P52298 156 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS35-211ENST00000569950 POLR2JP52435 117 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 MVDP53602 400 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 CLNS1AP54105 237 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 UCNP55089 124 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 IRX1P78414 480 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 BIKQ13323 160 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 EXOSC7Q15024 291 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 PGS1Q32NB8 556 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 GTDC1Q4AE62 458 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 PAGE3Q5JUK9 113 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 LYPD8Q6UX82 237 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 C16orf47Q6ZP98 133 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 R3HCC1LQ7Z5L2 792 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 MTDHQ86UE4 582 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 ANKRD46Q86W74 232 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 ZNF227Q86WZ6 799 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 GALNT12Q8IXK2 581 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 CLEC4FQ8N1N0 589 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 OR2L13Q8N349 312 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 GLB1L3Q8NCI6 653 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 M1APQ8TC57 530 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 GTF2H4Q92759 462 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 RIT1Q92963 219 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 ADIPOR1Q96A54 375 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 ELP4Q96EB1 424 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 FAM120BQ96EK7 910 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 RILPQ96NA2 401 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 DGAT2Q96PD7 388 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 LPAR4Q99677 370 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 PELOQ9BRX2 385 aaKnown RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 ING2Q9H160 280 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 ZNF552Q9H707 407 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 ZBTB20Q9HC78 741 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 GPATCH2Q9NW75 528 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 SLC25A37Q9NYZ2 338 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 ARMCX1Q9P291 453 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 C19orf25Q9UFG5 118 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 BTNL2Q9UIR0 455 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 C19orf53Q9UNZ5 99 aaPredicted RBP8.63□□□□□ -1.03
VPS35-211ENST00000569950 ERVK-19Q9WJR5 959 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 MAN2B2Q9Y2E5 1009 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 ZNF780BQ9Y6R6 833 aa8.63□□□□□ -1.03
VPS35-211ENST00000569950 NSG1A0A0A6YYJ2 146 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 PRSS51A0A1B0GVH4 220 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 A0A1W2PRB8 838 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 SYNDIG1LA6NDD5 238 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 FXYD1O00168 92 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 ADAM10O14672 748 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 IFNA16P05015 189 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 NCF2P19878 526 aaPredicted RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 NT5EP21589 574 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 MPIP34949 423 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 RPL3P39023 403 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 MAN2A2P49641 1150 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 CXADRP78310 365 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 SRSF11Q05519 484 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 HSPB3Q12988 150 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 ZNF267Q14586 743 aaPredicted RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 EBPQ15125 230 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 DPY19L1Q2PZI1 675 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 COL28A1Q2UY09 1125 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 BTBD16Q32M84 506 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 VPS26BQ4G0F5 336 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 TIGD2Q4W5G0 525 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 AGKQ53H12 422 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 FAM91A1Q658Y4 838 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 B3GNTL1Q67FW5 361 aaPredicted RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 SLC2A7Q6PXP3 512 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 C19orf48Q6RUI8 117 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 TMEM107Q6UX40 140 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 DLEU7Q6UYE1 221 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 NPSR1Q6W5P4 371 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms