RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SSX3Q99909 188 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 CYTL1Q9NRR1 136 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 MIS18AQ9NYP9 233 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 APOBEC3BQ9UH17 382 aaKnown RBP1.9□□□□□ -2.11
VPS35-207ENST00000568191 SLC9A8Q9Y2E8 581 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 AFF2P51816 1311 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 SDR42E2A6NKP2 422 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 TMEM110-MUSTN1A8MSY1 372 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 SLC16A8O95907 504 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 GAS8O95995 478 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 CHRNGP07510 517 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 C8orf89P0DMQ9 161 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 PVRP15151 417 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 STIP1P31948 543 aaKnown RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 TRIM23P36406 574 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 ARHGDIBP52566 201 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 RBP5P82980 135 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 CKAP4Q07065 602 aaKnown RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 ORC2Q13416 577 aaPredicted RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 GIT2Q14161 759 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 KYAT1Q16773 422 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 SHROOM1Q2M3G4 852 aaPredicted RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 TAF3Q5VWG9 929 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 TFAP2EQ6VUC0 442 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 GBP6Q6ZN66 633 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 STOX1Q6ZVD7 989 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 TMEM110Q86TL2 294 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 HOOK3Q86VS8 718 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 OR8H3Q8N146 312 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 CHDHQ8NE62 594 aaPredicted RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 TRPV3Q8NET8 790 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 OR4F5Q8NH21 305 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 SNRNP27Q8WVK2 155 aaKnown RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 PNPLA2Q96AD5 504 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 EPSTI1Q96J88 318 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 PIWIL1Q96J94 861 aaKnown RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 CITED2Q99967 270 aaPredicted RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 CACNG6Q9BXT2 260 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 NMUR2Q9GZQ4 415 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 ELOVL4Q9GZR5 314 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 NAPBQ9H115 298 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 ISG20L2Q9H9L3 353 aaKnown RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 ADGRL4Q9HBW9 690 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 TUFT1Q9NNX1 390 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 TMEM9Q9P0T7 183 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 FBXL5Q9UKA1 691 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 ATG4BQ9Y4P1 393 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 FLVCR1Q9Y5Y0 555 aa1.89□□□□□ -2.11
VPS35-207ENST00000568191 ZFP37Q9Y6Q3 630 aaPredicted RBP1.89□□□□□ -2.11
VPS35-207ENST00000568191 IGLV8-61A0A075B6I0 122 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 SMIM30A4D0T7 59 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 TTI1O43156 1089 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 EMC8O43402 210 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 LCMT2O60294 686 aaKnown RBP1.88□□□□□ -2.11
VPS35-207ENST00000568191 TSPAN2O60636 221 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 ATP9AO75110 1047 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 TBCAO75347 108 aaKnown RBP1.88□□□□□ -2.11
VPS35-207ENST00000568191 CA11O75493 328 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 GLCEO94923 617 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 GH1P01241 217 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 HSPB1P04792 205 aaKnown RBP1.88□□□□□ -2.11
VPS35-207ENST00000568191 SCG2P13521 617 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 RPS2P15880 293 aaKnown RBP1.88□□□□□ -2.11
VPS35-207ENST00000568191 CASTP20810 708 aaKnown RBP1.88□□□□□ -2.11
VPS35-207ENST00000568191 TKTL1P51854 596 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 KCNK10P57789 538 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 MECOMQ03112 1051 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 HSPA14Q0VDF9 509 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 KRT31Q15323 416 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 OR1C1Q15619 314 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 RHBDD2Q6NTF9 364 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 SCARA5Q6ZMJ2 495 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 ITIH5Q86UX2 942 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 LUZP1Q86V48 1076 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 CCDC83Q8IWF9 413 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 LAX1Q8IWV1 398 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 TUSC5Q8IXB3 177 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 KLHDC8AQ8IYD2 350 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 CCDC26Q8TAB7 109 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 AP2M1Q96CW1 435 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 VSIG2Q96IQ7 327 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 GUCD1Q96NT3 240 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 AGPAT1Q99943 283 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 NTMT1Q9BV86 223 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 ST6GALNAC5Q9BVH7 336 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 IKZF5Q9H5V7 419 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 TECRQ9NZ01 308 aaKnown RBP1.88□□□□□ -2.11
VPS35-207ENST00000568191 KLK12Q9UKR0 248 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 RAB26Q9ULW5 256 aa1.88□□□□□ -2.11
VPS35-207ENST00000568191 NPIPA5A0A0B4J1W7 369 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 OOEPA6NGQ2 149 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 NPIPA5E9PKD4 350 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 G3V3Y1 287 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 SLC7A4O43246 635 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 NUDT21O43809 227 aaKnown RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 EPOP01588 193 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 CENPBP07199 599 aaPredicted RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 ZP3P21754 424 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 FRKP42685 505 aaPredicted RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 TNFSF10P50591 281 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms