RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SULF2Q8IWU5 870 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 CPSF7Q8N684 471 aaKnown RBP12.39□□□□□ -0.43
CLK3-216ENST00000564468 ERP27Q96DN0 273 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 PGM2Q96G03 612 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 GPR137Q96N19 417 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 MECRQ9BV79 373 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 EBPLQ9BY08 206 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 BRINP2Q9C0B6 783 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 OR10A5Q9H207 317 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 MIEF1Q9NQG6 463 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 SACM1LQ9NTJ5 587 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 C1orf109Q9NX04 203 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 OSGIN2Q9Y236 505 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 FIS1Q9Y3D6 152 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 TRAF6Q9Y4K3 522 aa12.39□□□□□ -0.43
CLK3-216ENST00000564468 PCNX1Q96RV3 2341 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 ACOT7O00154 380 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 TFECO14948 347 aaPredicted RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 SNUPNO95149 360 aaKnown RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 ZWINTO95229 277 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 STSP08842 583 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 CREB1P16220 341 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 DDCP20711 480 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 CNR1P21554 472 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 SSTR4P31391 388 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 ETV4P43268 484 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 TMED10P49755 219 aaKnown RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 CASP6P55212 293 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 FAM219BQ5XKK7 198 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 KANK2Q63ZY3 851 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 HIST2H2BCQ6DN03 193 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 NOXRED1Q6NXP6 359 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 RGS9BPQ6ZS82 235 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 GK5Q6ZS86 529 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 IKBIPQ70UQ0 350 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 MDGA2Q7Z553 956 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 EXOC3L1Q86VI1 746 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 MMP21Q8N119 569 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 GHDCQ8N2G8 530 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 ZFP62Q8NB50 900 aaPredicted RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 C17orf47Q8NEP4 570 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 C16orf52Q8NHV5 167 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 ZNF675Q8TD23 568 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 DOK4Q8TEW6 326 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 EXOSC8Q96B26 276 aaKnown RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 SPACA9Q96E40 222 aaPredicted RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 CNRIP1Q96F85 164 aaPredicted RBP12.38□□□□□ -0.43
CLK3-216ENST00000564468 ZNF681Q96N22 645 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 BBS4Q96RK4 519 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 CCT7Q99832 543 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 LRTM1Q9HBL6 345 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 TNFRSF12AQ9NP84 129 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 MYNNQ9NPC7 610 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 SLC35C2Q9NQQ7 365 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 HEY2Q9UBP5 337 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 PRODH2Q9UF12 536 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 BCAP29Q9UHQ4 241 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 TMED5Q9Y3A6 229 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 CRYBG3Q68DQ2 2970 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 CELSR2Q9HCU4 2923 aa12.38□□□□□ -0.43
CLK3-216ENST00000564468 A0A1W2PS29 197 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 NPIPA5E9PKD4 350 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 TP53I11O14683 189 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 BIRC5O15392 142 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 ASNA1O43681 348 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 SEMA7AO75326 666 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 SLITRK5O94991 958 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CHRNGP07510 517 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CT62P0C5K7 136 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 DDX5P17844 614 aaKnown RBP12.37□□□□□ -0.43
CLK3-216ENST00000564468 SERPINB4P48594 390 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 NR0B1P51843 470 aaKnown RBP12.37□□□□□ -0.43
CLK3-216ENST00000564468 KCNK10P57789 538 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 DCAF7P61962 342 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 RPP38P78345 283 aaKnown RBP12.37□□□□□ -0.43
CLK3-216ENST00000564468 PLGLB1Q02325 96 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 ZNF750Q32MQ0 723 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 ZNF791Q3KP31 576 aaPredicted RBP12.37□□□□□ -0.43
CLK3-216ENST00000564468 TNFAIP8L3Q5GJ75 292 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 SH2D4BQ5SQS7 431 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 SLC22A10Q63ZE4 541 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 PAOXQ6QHF9 649 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 FAM47EQ6ZV65 393 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 DDIASQ8IXT1 998 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CCDC116Q8IYX3 515 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 KIRREL3Q8IZU9 778 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 ZNF615Q8N8J6 731 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CDC26Q8NHZ8 85 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 TWIST2Q8WVJ9 160 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CTHRC1Q96CG8 243 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 MAGED4Q96JG8 741 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 FAM173AQ9BQD7 235 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 KCNK9Q9NPC2 374 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 TAS2R7Q9NYW3 318 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 MAT2BQ9NZL9 334 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CNIH4Q9P003 139 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 ZNF639Q9UID6 485 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 NPIPA1Q9UND3 350 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 CCL27Q9Y4X3 112 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 POLR3HQ9Y535 204 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms