RNA–Protein interactions for RNA: ENST00000564172.1

GDE1-203, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene GDE1, Length 2,238 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-203ENST00000564172 TNRC6BQ9UPQ9 1833 aaKnown RBP16.72■□□□□ 0.27
GDE1-203ENST00000564172 LOC105369274A0A096LPK9 316 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 LOC102723532A0A0G2JNH3 316 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 RHPN2P1A8MT19 583 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 SLC35G6P0C7Q6 338 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 ST6GAL1P15907 406 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 HOXB9P17482 250 aaPredicted RBP16.72■□□□□ 0.27
GDE1-203ENST00000564172 NELFEP18615 380 aaKnown RBP16.72■□□□□ 0.27
GDE1-203ENST00000564172 LIPEQ05469 1076 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 DUOXA1Q1HG43 343 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 RUNDC3AQ59EK9 446 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 RNF44Q7L0R7 432 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 SLC35F3Q8IY50 421 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 CLECL1Q8IZS7 167 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 OR4N4Q8N0Y3 316 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 MMP21Q8N119 569 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 PIK3R3Q92569 461 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 PPCDCQ96CD2 204 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 PANX1Q96RD7 426 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 TBCDQ9BTW9 1192 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 ALG2Q9H553 416 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 IL21RQ9HBE5 538 aa16.72■□□□□ 0.27
GDE1-203ENST00000564172 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.72■□□□□ 0.27
GDE1-203ENST00000564172 A0A1B0GTQ1 180 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 HIST1H1TP22492 207 aaPredicted RBP16.71■□□□□ 0.27
GDE1-203ENST00000564172 EPHA8P29322 1005 aaPredicted RBP16.71■□□□□ 0.27
GDE1-203ENST00000564172 GSK3BP49841 420 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 ATXN3P54252 364 aaPredicted RBP16.71■□□□□ 0.27
GDE1-203ENST00000564172 EEFSECP57772 596 aaKnown RBP16.71■□□□□ 0.27
GDE1-203ENST00000564172 RAB8AP61006 207 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 YIF1BQ5BJH7 314 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 ANXA8L1Q5VT79 327 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 DEPDC4Q8N2C3 294 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 ACOT4Q8N9L9 421 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 ZBTB44Q8NCP5 570 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 OR6F1Q8NGZ6 308 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 OR8K5Q8NH50 307 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 TIGARQ9NQ88 270 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 MIEF1Q9NQG6 463 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 ZSCAN32Q9NX65 697 aa16.71■□□□□ 0.27
GDE1-203ENST00000564172 P2RX6O15547 441 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 NUDT21O43809 227 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 PEX14O75381 377 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 MFN2O95140 757 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 DDCP20711 480 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 EFNA1P20827 205 aaPredicted RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 MATN1P21941 496 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 ATP5A1P25705 553 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 ALDH4A1P30038 563 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 TSFMP43897 325 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 GSTM5P46439 218 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 POLR2GP62487 172 aaKnown RBP eCLIP16.7■□□□□ 0.26
GDE1-203ENST00000564172 TRA2BP62995 288 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 KRR1Q13601 381 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 HEPACAMQ14CZ8 416 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 MPEG1Q2M385 716 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 HLA-BQ31612 363 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 IFNEQ86WN2 208 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 GALNT12Q8IXK2 581 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 CAMKVQ8NCB2 501 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 DUS3LQ96G46 650 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 MAGED4Q96JG8 741 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 CCDC115Q96NT0 180 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 MAP3K3Q99759 626 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 IKZF5Q9H5V7 419 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 FAM60AQ9NP50 221 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 TAS2R7Q9NYW3 318 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 BTNL2Q9UIR0 455 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 TMEM131Q92545 1883 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 ARID1BQ8NFD5 2236 aaPredicted RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 H0YGG7 62 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 PLOD2O00469 737 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 RNASET2O00584 256 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 SLITRK5O94991 958 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 CPSF4O95639 269 aaKnown RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 CFIP05156 583 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 SP9P0CG40 484 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 AVPR2P30518 371 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 TALDO1P37837 337 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 EPHA4P54764 986 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 ARF3P61204 181 aaPredicted RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 RHAGQ02094 409 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 SNTA1Q13424 505 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 SLC9A5Q14940 896 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 PRSS53Q2L4Q9 553 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 ZNF528Q3MIS6 628 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 IGSF11Q5DX21 431 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 AGAP6Q5VW22 663 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 KANSL1Q7Z3B3 1105 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 BMP8AQ7Z5Y6 402 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 GATAD2AQ86YP4 633 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 LINC00518Q8N0U6 118 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 PIK3C3Q8NEB9 887 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 GAL3ST3Q96A11 431 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 RERGQ96A58 199 aaPredicted RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 AURKBQ96GD4 344 aaPredicted RBP16.7■□□□□ 0.26
GDE1-203ENST00000564172 TMEM80Q96HE8 168 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 AGAP4Q96P64 663 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 BCL7BQ9BQE9 202 aa16.7■□□□□ 0.26
GDE1-203ENST00000564172 THUMPD3Q9BV44 507 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms