RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 LSM11P83369 360 aaKnown RBP eCLIP13.22□□□□□ -0.291e-6■■■□□ 15.6
VPS9D1-202ENST00000561976 COX10Q12887 443 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 SYPL1Q16563 259 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 QSOX2Q6ZRP7 698 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 ZER1Q7Z7L7 766 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 TMEM25Q86YD3 366 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 PLCZ1Q86YW0 608 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 TRAPPC5Q8IUR0 188 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 XAGE5Q8WWM1 108 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 UBE2E3Q969T4 207 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 EXOSC8Q96B26 276 aaKnown RBP13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 ZBED6CLQ96FA7 236 aaPredicted RBP13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 LMLNQ96KR4 655 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 SGPP1Q9BX95 441 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 RRAGCQ9HB90 399 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 ZSCAN32Q9NX65 697 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 AHSPQ9NZD4 102 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 TRPC4Q9UBN4 977 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 FBXW2Q9UKT8 454 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 A4GNTQ9UNA3 340 aa13.22□□□□□ -0.29
VPS9D1-202ENST00000561976 SMLR1H3BR10 107 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 LYRM1O43325 122 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 AKR7A2O43488 359 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 PROM1O43490 865 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TIMP2P16035 220 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 DDCP20711 480 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 SMSP52788 366 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 P2RX3P56373 397 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 ALDH6A1Q02252 535 aaKnown RBP13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 RAB33AQ14088 237 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 SLC9B2Q86UD5 537 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 CRIPAKQ8N1N5 446 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TBC1D17Q9HA65 648 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TEKT2Q9UIF3 430 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 MYOFQ9NZM1 2061 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 A0A1W2PRU2 124 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 SNTNA6NMZ2 147 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 OR2B3O76000 313 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 NCR1O76036 304 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 ELFN1P0C7U0 828 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 OR12D1P0DN82 309 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 NR2F1P10589 423 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 ACP2P11117 423 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TPBGQ13641 420 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 CEP78Q5JTW2 689 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 ZNF57Q68EA5 555 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TIGD3Q6B0B8 471 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 OLIG3Q7RTU3 272 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 LHFPL3Q86UP9 236 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TCEAL8Q8IYN2 117 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 ZNF557Q8N988 423 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TMEM163Q8TC26 289 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 SMPDL3AQ92484 453 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 SCLYQ96I15 445 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 IL17FQ96PD4 163 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TREX2Q9BQ50 279 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TMED9Q9BVK6 235 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 TMEM39AQ9NV64 488 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 CLCA2Q9UQC9 943 aa13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 SF3B6Q9Y3B4 125 aaKnown RBP13.21□□□□□ -0.29
VPS9D1-202ENST00000561976 PRRC2BQ5JSZ5 2229 aaKnown RBP13.21□□□□□ -0.3
VPS9D1-202ENST00000561976 CRYZL1O95825 349 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 C1QBP02746 253 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 ACADMP11310 421 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 GABRA5P31644 462 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 RAB25P57735 213 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 RAB40BQ12829 278 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 MRPL28Q13084 256 aaKnown RBP13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 NDUFA9Q16795 377 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 RFPL4BQ6ZWI9 263 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 TP53I13Q8NBR0 393 aaPredicted RBP13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 TMEM145Q8NBT3 493 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 SUN5Q8TC36 379 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 GPA33Q99795 319 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 FAM83CQ9BQN1 747 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 HDHD5Q9BXW7 423 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 MTG2Q9H4K7 406 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 EGLN3Q9H6Z9 239 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 NIPAL2Q9H841 368 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 NEUROD4Q9HD90 331 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 MCUBQ9NWR8 336 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 RNF186Q9NXI6 227 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 PLAGL1Q9UM63 463 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 HSPB11Q9Y547 144 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 HTTP42858 3142 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 LOC102723532A0A0G2JNH3 316 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 A0A0X1KG70 313 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 A0A1W2PRQ8 180 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 TMEM129A0AVI4 362 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 C12orf71A8MTZ7 269 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 ISM1B1AKI9 464 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 PLPP1O14494 284 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 PRODHO43272 600 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 B4GALT2O60909 372 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 TRIM3O75382 744 aaPredicted RBP13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 AVPR1BP47901 424 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 MTNR1AP48039 350 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 CCT3P49368 545 aaKnown RBP13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 SLC7A9P82251 487 aa13.2□□□□□ -0.3
VPS9D1-202ENST00000561976 CAP1Q01518 475 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms