RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PTGER1P34995 402 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SOX18P35713 384 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SLC1A6P48664 564 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SSR4P51571 173 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SLC37A1P57057 533 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 OC90Q02509 493 aaPredicted RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 C2orf80Q0P641 193 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 MGAT2Q10469 447 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 FUT7Q11130 342 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 STX3Q13277 289 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 CEBPEQ15744 281 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 IGFBP7Q16270 282 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 INAQ16352 499 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 PRSS53Q2L4Q9 553 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 RFTN2Q52LD8 501 aaPredicted RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 ZNF766Q5HY98 468 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 FAM180BQ6P0A1 224 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 RNF111Q6ZNA4 994 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 PIGWQ7Z7B1 504 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 ZNF227Q86WZ6 799 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SAMD14Q8IZD0 417 aaPredicted RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 LRRC25Q8N386 305 aaPredicted RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 CISD2Q8N5K1 135 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 ZNF781Q8N8C0 355 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 OR5L2Q8NGL0 311 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SUN3Q8TAQ9 357 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 NUBPLQ8TB37 319 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 EXOSC8Q96B26 276 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 SNRNP40Q96DI7 357 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 C19orf60Q96EN9 201 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SCMH1Q96GD3 660 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 PPP3R2Q96LZ3 170 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 C3orf30Q96M34 536 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 RASL10BQ96S79 203 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 BARD1Q99728 777 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 LIN28AQ9H9Z2 209 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 SLC35C2Q9NQQ7 365 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 MAT2BQ9NZL9 334 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 YARS2Q9Y2Z4 477 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 TMED5Q9Y3A6 229 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 PCDHGB6Q9Y5F9 930 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 ZNF780BQ9Y6R6 833 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 ATP6AP2A0A1C7CYW4 349 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 WWP2O00308 870 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF354AO60765 605 aaPredicted RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 SNNO75324 88 aaPredicted RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 SLC25A12O75746 678 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ATP6AP2O75787 350 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 NADKO95544 446 aaPredicted RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 BCKDHAP12694 445 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 S1PR1P21453 382 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 CYB561P49447 251 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 MAP4K2Q12851 820 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 DUSP8Q13202 625 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 EBPQ15125 230 aaKnown RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 LTB4RQ15722 352 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 PDCD2Q16342 344 aaPredicted RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 MPEG1Q2M385 716 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 PRICKLE4Q2TBC4 344 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 GALNTL6Q49A17 601 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ATP6AP1LQ52LC2 224 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF628Q5EBL2 1059 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 C6orf136Q5SQH8 315 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 HIVEP3Q5T1R4 2406 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 C6orf163Q5TEZ5 329 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 SPINK14Q6IE38 97 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 FAM111BQ6SJ93 734 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 TICAM1Q8IUC6 712 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 GPALPP1Q8IXQ4 340 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 LRRC34Q8IZ02 419 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 KIRREL3Q8IZU9 778 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 CYP4Z2PQ8N1L4 340 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 VWA5B2Q8N398 1253 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 HORMAD2Q8N7B1 307 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF615Q8N8J6 731 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF441Q8N8Z8 693 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 OR7G1Q8NGA0 311 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF675Q8TD23 568 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 GRHL3Q8TE85 626 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 CTHRC1Q96CG8 243 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF764Q96H86 408 aaPredicted RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 EGLN2Q96KS0 407 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 C5orf34Q96MH7 638 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 TSSK3Q96PN8 268 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 TAAR6Q96RI8 345 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 HES7Q9BYE0 225 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 WWTR1Q9GZV5 400 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 MANSC1Q9H8J5 431 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 MIEF1Q9NQG6 463 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 PFDN4Q9NQP4 134 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 GIMAP4Q9NUV9 329 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ASF1BQ9NVP2 202 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 TAS2R7Q9NYW3 318 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 LRFN1Q9P244 771 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 KLHL14Q9P2G3 628 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ZNF639Q9UID6 485 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 ENTPD4Q9Y227 616 aa8.67□□□□□ -1.02
LDLR-211ENST00000560173 COPG1Q9Y678 874 aaKnown RBP8.67□□□□□ -1.02
LDLR-211ENST00000560173 MYO1GB0I1T2 1018 aa8.66□□□□□ -1.02
LDLR-211ENST00000560173 NME2P1O60361 137 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms