RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SENP5Q96HI0 755 aaPredicted RBP9.38□□□□□ -0.91
USP3-216ENST00000559873 GAL3ST4Q96RP7 486 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 UBL7Q96S82 380 aaPredicted RBP9.38□□□□□ -0.91
USP3-216ENST00000559873 FAM107BQ9H098 131 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 OR10A5Q9H207 317 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 GLIPR2Q9H4G4 154 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 RMND5AQ9H871 391 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 C3orf14Q9HBI5 128 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 PTGFRNQ9P2B2 879 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 BCAP29Q9UHQ4 241 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 LHX6Q9UPM6 363 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 ZNF451Q9Y4E5 1061 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 COPG1Q9Y678 874 aaKnown RBP9.38□□□□□ -0.91
USP3-216ENST00000559873 SCN2AQ99250 2005 aa9.38□□□□□ -0.91
USP3-216ENST00000559873 PRSS51A0A1B0GVH4 220 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 A0A1W2PS29 197 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 FAM234BA2RU67 622 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TTC36A6NLP5 189 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 A8MUI8 341 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 PLOD2O00469 737 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 RNASET2O00584 256 aaKnown RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 CFLARO15519 480 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 PLOD3O60568 738 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 PGRP06401 933 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 CELA2AP08217 269 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 LAMP1P11279 417 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SSTR4P31391 388 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 MC3RP41968 323 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 GPR143P51810 404 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 POLR2JP52435 117 aaKnown RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 SLC37A1P57057 533 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 UFM1P61960 85 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 DCAF7P61962 342 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 RNF4P78317 190 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 MRPS35P82673 323 aaKnown RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 Q0VFX4 171 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 ZNF155Q12901 538 aaPredicted RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 RAPSNQ13702 412 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 MAPRE2Q15555 327 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 ZNHIT3Q15649 155 aaPredicted RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 LTB4RQ15722 352 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SPDYE7PQ495Y7 208 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 LACTB2Q53H82 288 aaPredicted RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 ZNF385BQ569K4 471 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SPANXN4Q5MJ08 99 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 OR4F3Q6IEY1 312 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 CGB2Q6NT52 195 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TCTN3Q6NUS6 607 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TMEM107Q6UX40 140 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TMEM64Q6YI46 380 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SZRD1Q7Z422 152 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 MTERF4Q7Z6M4 381 aaKnown RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 RPS19BP1Q86WX3 136 aaKnown RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 TAGAPQ8N103 731 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SIRT6Q8N6T7 355 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TRIML2Q8N7C3 387 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 C17orf47Q8NEP4 570 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 ADCY4Q8NFM4 1077 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 FDCSPQ8NFU4 85 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 OR56A1Q8NGH5 318 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SLC22A8Q8TCC7 542 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 ZNF721Q8TF20 911 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TTC9Q92623 222 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 CIDECQ96AQ7 238 aaPredicted RBP9.37□□□□□ -0.91
USP3-216ENST00000559873 CTHRC1Q96CG8 243 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 MS4A4EQ96PG1 132 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 RNF32Q9H0A6 362 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 SLAMF7Q9NQ25 335 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TAS2R9Q9NYW1 312 aa9.37□□□□□ -0.91
USP3-216ENST00000559873 TLN1Q9Y490 2541 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 C2orf92A0A1B0GVN3 265 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 SLC22A2O15244 555 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 DPM1O60762 260 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 CCDC22O60826 627 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ABCB1P08183 1280 aaPredicted RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 KRT16P08779 473 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 CT62P0C5K7 136 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 FAM87AP0C7U9 286 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 SOAT1P35610 550 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 SOX11P35716 441 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 TMED10P49755 219 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 SSR4P51571 173 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 SEC24CP53992 1094 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 NRG3P56975 720 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ARG2P78540 354 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 DUSP2Q05923 314 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 MFAP5Q13361 173 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 RCAN2Q14206 197 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 EBPQ15125 230 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 VPS26BQ4G0F5 336 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 TIGD2Q4W5G0 525 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ACER2Q5QJU3 275 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 H3F3CQ6NXT2 135 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 PAOXQ6QHF9 649 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 FAM111BQ6SJ93 734 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 DGAT2L6Q6ZPD8 337 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ZNF551Q7Z340 670 aaPredicted RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 C9orf40Q8IXQ3 194 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 GPALPP1Q8IXQ4 340 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 DND1Q8IYX4 353 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms