RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 OR8J2Q8NGG1 315 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 STARD5Q9NSY2 213 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 TMEFF2Q9UIK5 374 aaPredicted RBP14.09□□□□□ -0.15
CUX1-215ENST00000556210 OTOFQ9HC10 1997 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 CPNE3O75131 537 aaKnown RBP14.09□□□□□ -0.15
CUX1-215ENST00000556210 JRKO75564 520 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 PTTG1O95997 202 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 SLC9A3P48764 834 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 ZSWIM7Q19AV6 140 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 C6orf132Q5T0Z8 1188 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 MLIPQ5VWP3 458 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 ADGRD2Q7Z7M1 963 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 PARP16Q8N5Y8 322 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 UXS1Q8NBZ7 420 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 IRF2BPLQ9H1B7 796 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 TBX21Q9UL17 535 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 STON1Q9Y6Q2 735 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 FABP12A6NFH5 140 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 GRXCR2A6NFK2 248 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 FAM183AA6NL82 134 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 H0YIV9 168 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 P2RY2P41231 377 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 MC3RP41968 323 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 VEZF1Q14119 521 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 SLC30A6Q6NXT4 461 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 TMC8Q8IU68 726 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 OR52L1Q8NGH7 329 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 GAL3ST1Q99999 423 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 MBNL1Q9NR56 388 aaKnown RBP14.09□□□□□ -0.15
CUX1-215ENST00000556210 CCL27Q9Y4X3 112 aa14.09□□□□□ -0.15
CUX1-215ENST00000556210 ALPPP05187 535 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 HSD3B1P14060 373 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 HOXB2P14652 356 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 ALAS2P22557 587 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 HSD3B2P26439 372 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 CDC73Q6P1J9 531 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 TUBA3EQ6PEY2 450 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 SLC9B2Q86UD5 537 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 REM2Q8IYK8 340 aaPredicted RBP14.08□□□□□ -0.15
CUX1-215ENST00000556210 OR51G2Q8NGK0 314 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 SPPL3Q8TCT6 385 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 UCN3Q969E3 161 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 FAM46AQ96IP4 442 aaKnown RBP14.08□□□□□ -0.15
CUX1-215ENST00000556210 SLC52A3Q9NQ40 469 aa14.08□□□□□ -0.15
CUX1-215ENST00000556210 KNTC1P50748 2209 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 OR6C70A6NIJ9 312 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 A8MUA0 341 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 FURINP09958 794 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 PVRP15151 417 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 SLC35A2P78381 396 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 FADDQ13158 208 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 RUNX3Q13761 415 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 SPHARQ15513 63 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 GPR19Q15760 415 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 FRMPD2BQ6IN97 320 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 PNCKQ6P2M8 343 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 PRR23CQ6ZRP0 262 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 ASB18Q6ZVZ8 466 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 COX18Q8N8Q8 333 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 ZNF784Q8NCA9 323 aaPredicted RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 OR51L1Q8NGJ5 315 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 OR9A2Q8NGT5 310 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 CLEC2DQ9UHP7 191 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 HSPE1-MOB4S4R3N1 261 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 RGPD3A6NKT7 1758 aaPredicted RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 RGPD4Q7Z3J3 1758 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 FAM240BA0A1B0GVZ2 78 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 RNASET2O00584 256 aaKnown RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 SLC16A6O15403 523 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 IFI30P13284 250 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 CHMP24386 653 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 DDX6P26196 483 aaKnown RBP eCLIP14.08□□□□□ -0.16
CUX1-215ENST00000556210 EIF2DP41214 584 aaKnown RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 CASP3P42574 277 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 FBXW4P57775 412 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 CDK3Q00526 305 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 HNRNPA0Q13151 305 aaKnown RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 WSCD2Q2TBF2 565 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 FBXO43Q4G163 708 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 LRIF1Q5T3J3 769 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 SYT6Q5T7P8 510 aaPredicted RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 SYCE2Q6PIF2 218 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 SUN5Q8TC36 379 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 DYNC2LI1Q8TCX1 351 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 UBTD2Q8WUN7 234 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 OR5P2Q8WZ92 322 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 NEUROD4Q9HD90 331 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 ZC4H2Q9NQZ6 224 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 RPL36Q9Y3U8 105 aaKnown RBP14.08□□□□□ -0.16
CUX1-215ENST00000556210 SCN3AQ9NY46 2000 aa14.08□□□□□ -0.16
CUX1-215ENST00000556210 HTR1AP08908 422 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 PCGF2P35227 344 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 TALDO1P37837 337 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 KEAP1Q14145 624 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 OR2G6Q5TZ20 316 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 IFT27Q9BW83 186 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 TMEM184CQ9NVA4 438 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 SPAG17Q6Q759 2223 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 PLPP1O14494 284 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 B4GALT2O60909 372 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms