RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 LRIT1Q9P2V4 623 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 TMEFF2Q9UIK5 374 aaPredicted RBP13.82□□□□□ -0.2
VPS33B-205ENST00000556096 PILRBQ9UKJ0 227 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 PLCL2Q9UPR0 1127 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 MYRFQ9Y2G1 1151 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 ORC6Q9Y5N6 252 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 RNF215Q9Y6U7 377 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 GPR179Q6PRD1 2367 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 SCN3AQ9NY46 2000 aa13.82□□□□□ -0.2
VPS33B-205ENST00000556096 PRAMEF25A6NGN4 478 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF860A6NHJ4 632 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 PATE3B3GLJ2 98 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 HS6ST1O60243 411 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SERPINB7O75635 380 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 DNAJB5O75953 348 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SLITRK5O94991 958 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GPR75O95800 540 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 CPMP14384 443 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GNSP15586 552 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 MAN2A2P49641 1150 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 CRISP3P54108 245 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SKP1P63208 163 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 NHLH1Q02575 133 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 LASP1Q14847 261 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SYPL1Q16563 259 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 DUSP7Q16829 419 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 DEFB110Q30KQ9 67 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 RPS26P11Q5JNZ5 115 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 KDM4DQ6B0I6 523 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 KRT73Q86Y46 540 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SLC44A2Q8IWA5 706 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SLC25A45Q8N413 288 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SMYD1Q8NB12 490 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF555Q8NEP9 628 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 APOBEC4Q8WW27 367 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 RMND5BQ96G75 393 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 MBOAT4Q96T53 435 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 TREX2Q9BQ50 279 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 YTHDF1Q9BYJ9 559 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 MRPS26Q9BYN8 205 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 CLK4Q9HAZ1 481 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 PDP1Q9P0J1 537 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 PTGFRNQ9P2B2 879 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GPC6Q9Y625 555 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ENPP4Q9Y6X5 453 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 WDR87Q6ZQQ6 2873 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 A0A0G2JPF8 293 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 HNRNPCL2B2RXH8 293 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 HNRNPCL3B7ZW38 293 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 KIF1CO43896 1103 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ATP1B1P05026 303 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 HNRNPCL4P0DMR1 293 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ETS2P15036 469 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 RRM2P31350 389 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 PTGER1P34995 402 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 NBL1P41271 181 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GPR3P46089 330 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 XCR1P46094 333 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 OR1E2P47887 323 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 KCNJ5P48544 419 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 DAPP51397 102 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 BNC1Q01954 994 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 BNIP3Q12983 259 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 FAM53BQ14153 422 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 LTB4RQ15722 352 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 KCTD21Q4G0X4 260 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GARNL3Q5VVW2 1013 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ANKRD34AQ69YU3 496 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 OR2L13Q8N349 312 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 OR5T3Q8NGG3 340 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 KAT2AQ92830 837 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 GIMAP5Q96F15 307 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 C16orf58Q96GQ5 468 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 TGM7Q96PF1 710 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 OR7D2Q96RA2 312 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ELF4Q99607 663 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 BARD1Q99728 777 aaKnown RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SPATA5L1Q9BVQ7 753 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 BTBD2Q9BX70 525 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 ACTRT3Q9BYD9 372 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 AMBRA1Q9C0C7 1298 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SOX17Q9H6I2 414 aaPredicted RBP13.81□□□□□ -0.2
VPS33B-205ENST00000556096 PDE7BQ9NP56 450 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 EXD2Q9NVH0 621 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 SUSD2Q9UGT4 822 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 LIPT1Q9Y234 373 aa13.81□□□□□ -0.2
VPS33B-205ENST00000556096 DUXAA6NLW8 204 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 SGK494L7N484 410 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 SLC16A6O15403 523 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 CLIC3O95833 236 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 RECKO95980 971 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 IFNW1P05000 195 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 FESP07332 822 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 CTSBP07858 339 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 GIMD1P0DJR0 217 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 GLB1P16278 677 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 RHCEP18577 417 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 TNFRSF1BP20333 461 aa13.8□□□□□ -0.2
VPS33B-205ENST00000556096 IGFBP5P24593 272 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms