RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 NTMQ9P121 344 aa13.56□□□□□ -0.24
SHMT2-210ENST00000553950 PRODH2Q9UF12 536 aa13.56□□□□□ -0.24
SHMT2-210ENST00000553950 KLK13Q9UKR3 277 aa13.56□□□□□ -0.24
SHMT2-210ENST00000553950 PCDHB14Q9Y5E9 798 aa13.56□□□□□ -0.24
SHMT2-210ENST00000553950 CLDN16Q9Y5I7 305 aa13.56□□□□□ -0.24
SHMT2-210ENST00000553950 SPEGQ15772 3267 aa13.56□□□□□ -0.24
SHMT2-210ENST00000553950 LOC102723996A0A087X1L8 192 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TRABD2BA6NFA1 517 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 ERICH4A6NGS2 130 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 OR6C76A6NM76 312 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TGFBR3LH3BV60 316 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 CLIC1O00299 241 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 CNOT3O75175 753 aaKnown RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 KLF7O75840 302 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 DNAJC8O75937 253 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 AGR2O95994 175 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 EFNA1P20827 205 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 PTPN6P29350 595 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 CDKN2CP42773 168 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 NCALDP61601 193 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TP53BP2Q13625 1128 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 SSPNQ14714 243 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 ZNHIT3Q15649 155 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 LTB4RQ15722 352 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 SFT2D3Q587I9 215 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 SAXO2Q658L1 398 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 FAM180BQ6P0A1 224 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 C8orf82Q6P1X6 216 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 SHISA6Q6ZSJ9 500 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 ZNF771Q7L3S4 317 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 CPEB2Q7Z5Q1 589 aaKnown RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TMEM151BQ8IW70 566 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 DEFB107AQ8IZN7 70 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TNIP2Q8NFZ5 429 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 OR52N2Q8NGI0 321 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 ZFP90Q8TF47 636 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 NUDT8Q8WV74 236 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 NKD1Q969G9 470 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 CTHRC1Q96CG8 243 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 FAM120BQ96EK7 910 aaKnown RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 RNF31Q96EP0 1072 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 GPATCH1Q9BRR8 931 aaKnown RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 SCNM1Q9BWG6 230 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TPT1P8Q9HAU6 139 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 PNO1Q9NRX1 252 aaKnown RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TAS2R1Q9NYW7 299 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 VAPAQ9P0L0 249 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 ABCD2Q9UBJ2 740 aa13.55□□□□□ -0.24
SHMT2-210ENST00000553950 FAF1Q9UNN5 650 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 C19orf53Q9UNZ5 99 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-210ENST00000553950 TMEM247A6NEH6 219 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 DUXAA6NLW8 204 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 TERTO14746 1132 aaKnown RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 ASNA1O43681 348 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 CD1EP15812 388 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 CPOXP36551 454 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 PGDP52209 483 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 EEFSECP57772 596 aaKnown RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 SLC25A3Q00325 362 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 DUSP2Q05923 314 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 FUT7Q11130 342 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 CAPRIN1Q14444 709 aaKnown RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 EXT1Q16394 746 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 ZNF750Q32MQ0 723 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 RUNDC3AQ59EK9 446 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 NANOGP8Q6NSW7 305 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 PAPD4Q6PIY7 484 aaKnown RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 RNF111Q6ZNA4 994 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 RINLQ6ZS11 566 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 LAPTM4BQ86VI4 370 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 MARCH9Q86YJ5 346 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 NUP43Q8NFH3 380 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 MIPOL1Q8TD10 442 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 SLC7A6OSQ96CW6 309 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 RAB3IPQ96QF0 476 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 ECSITQ9BQ95 431 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 THUMPD3Q9BV44 507 aaKnown RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 CNPPD1Q9BV87 410 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 NANOGQ9H9S0 305 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 SLC25A37Q9NYZ2 338 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 ADA2Q9NZK5 511 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 ZNF639Q9UID6 485 aa13.54□□□□□ -0.24
SHMT2-210ENST00000553950 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.54□□□□□ -0.24
SHMT2-210ENST00000553950 A0A1W2PS29 197 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 PEX12O00623 359 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 PSMG1O95456 288 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 STAMBPO95630 424 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 GSNP06396 782 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 UMODP07911 640 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 SLC6A2P23975 617 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 SLC7A2P52569 658 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 ZNF155Q12901 538 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-210ENST00000553950 GNA13Q14344 377 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 ZNF267Q14586 743 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-210ENST00000553950 FAAH2Q6GMR7 532 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 ERICH5Q6P6B1 374 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 LANCL3Q6ZV70 420 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 SERPINA11Q86U17 422 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 SLC30A8Q8IWU4 369 aa13.53□□□□□ -0.24
SHMT2-210ENST00000553950 CDRT4Q8N9R6 151 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms