RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 GTPBP1O00178 669 aaKnown RBP13.9□□□□□ -0.18
HOXC11-202ENST00000546378 PROS1P07225 676 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 CD3GP09693 182 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 HLA-FP30511 346 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 CXCR4P61073 352 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 PRKCDQ05655 676 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 ODF4Q2M2E3 257 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 SYNPOQ8N3V7 929 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 NATD1Q8N6N6 113 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 ZNF689Q96CS4 500 aaPredicted RBP13.9□□□□□ -0.18
HOXC11-202ENST00000546378 C17orf62Q9BQA9 187 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 SLC12A9Q9BXP2 914 aa13.9□□□□□ -0.18
HOXC11-202ENST00000546378 SIGLEC5O15389 551 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 H1F0P07305 194 aaKnown RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TIA1P31483 386 aaKnown RBP eCLIP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 PPM1AP35813 382 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 MLLT3P42568 568 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 DCDC1P59894 354 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 POU6F2P78424 691 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 RING1Q06587 406 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SIGLEC14Q08ET2 396 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 RPA4Q13156 261 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 KRT33BQ14525 404 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 PUM1Q14671 1186 aaKnown RBP eCLIP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SAXO2Q658L1 398 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TPRG1Q6ZUI0 275 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 KCT2Q8NC54 265 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SLC38A5Q8WUX1 472 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 GEMIN6Q8WXD5 167 aaKnown RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ZNF566Q969W8 418 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 KCTD7Q96MP8 289 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TM7SF3Q9NS93 570 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 NUDT15Q9NV35 164 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 DKK3Q9UBP4 350 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 CHD5Q8TDI0 1954 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TNFRSF10AO00220 468 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 NRG2O14511 850 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 FFAR1O14842 300 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TP53P04637 393 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ELFN1P0C7U0 828 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 MAP2K3P46734 347 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ARHGDIBP52566 201 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 NTHL1P78549 312 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 EFR3AQ14156 821 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 FXNQ16595 210 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 CCDC190Q86UF4 302 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TRIM69Q86WT6 500 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 PHC2Q8IXK0 858 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 CCDC116Q8IYX3 515 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SAMD12Q8N8I0 201 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 CYB561A3Q8NBI2 242 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 BBS1Q8NFJ9 593 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 NEIL3Q8TAT5 605 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ZG16BQ96DA0 208 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 NKX3-1Q99801 234 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ZSCAN5AQ9BUG6 496 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 PLA2G12AQ9BZM1 189 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 EXTL2Q9UBQ6 330 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SLC23A1Q9UHI7 598 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 PCDHGB1Q9Y5G3 927 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 MYO16Q9Y6X6 1858 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TSC2P49815 1807 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 CHURC1-FNTBB4DL54 471 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SSNA1O43805 119 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 C1SP09871 688 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 CYP2A6P11509 494 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 IMPA1P29218 277 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 VIPR1P32241 457 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 IRS1P35568 1242 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 AP2S1P53680 142 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 AP1S1P61966 158 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 RAE1P78406 368 aaKnown RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ZNF763Q0D2J5 394 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 COX10Q12887 443 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 RAB33AQ14088 237 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 OTPQ5XKR4 325 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 LRRC70Q7Z2Q7 622 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 SERPINA12Q8IW75 414 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 AMER3Q8N944 861 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 OR4K5Q8NGD3 323 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 OR4D11Q8NGI4 311 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 ZNF480Q8WV37 535 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 TESCQ96BS2 214 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 C12orf66Q96MD2 445 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 REEP4Q9H6H4 257 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 H2AFY2Q9P0M6 372 aaPredicted RBP13.89□□□□□ -0.19
HOXC11-202ENST00000546378 WNT6Q9Y6F9 365 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 VWA8A3KMH1 1905 aa13.89□□□□□ -0.19
HOXC11-202ENST00000546378 A0A0G2JMP0 313 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 ABLIM3O94929 683 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 ZNF81P51508 661 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 TAS2R41P59536 307 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 FADDQ13158 208 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 GPR50Q13585 617 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 TMEM240Q5SV17 173 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 C1orf53Q5VUE5 145 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 HIST2H2AA3Q6FI13 130 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 RPTNQ6XPR3 784 aa13.88□□□□□ -0.19
HOXC11-202ENST00000546378 OR4N5Q8IXE1 308 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms