RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SEMA4BQ9NPR2 832 aaPredicted RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 NPDC1Q9NQX5 325 aaPredicted RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 CNOT11Q9UKZ1 510 aaKnown RBP12.07□□□□□ -0.48
RTN3-207ENST00000536011 PSME2Q9UL46 239 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 SNX6Q9UNH7 406 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 FAM215AQ9Y5M1 114 aa12.07□□□□□ -0.48
RTN3-207ENST00000536011 A0A087WUV0 522 aaPredicted RBP12.06□□□□□ -0.48
RTN3-207ENST00000536011 C1orf226A1L170 272 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 LRRC3CA6NJW4 275 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 PGRMC2O15173 223 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 CPMP14384 443 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 PORP16435 677 aaPredicted RBP12.06□□□□□ -0.48
RTN3-207ENST00000536011 NT5EP21589 574 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 SSTR4P31391 388 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 DEKP35659 375 aaKnown RBP12.06□□□□□ -0.48
RTN3-207ENST00000536011 MASP1P48740 699 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 XKP51811 444 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 NR0B1P51843 470 aaKnown RBP12.06□□□□□ -0.48
RTN3-207ENST00000536011 FUT7Q11130 342 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 MYBPHQ13203 477 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 RIPPLY2Q5TAB7 128 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 CES4AQ5XG92 561 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 ADGRD1Q6QNK2 874 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 COMMD6Q7Z4G1 85 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 PACS2Q86VP3 889 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 LCA5Q86VQ0 697 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 VWA5B2Q8N398 1253 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 METTL4Q8N3J2 472 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 MMGT1Q8N4V1 131 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 ZNF441Q8N8Z8 693 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 FAIM2Q9BWQ8 316 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 MRPL1Q9BYD6 325 aaKnown RBP12.06□□□□□ -0.48
RTN3-207ENST00000536011 OR10A5Q9H207 317 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 TEX10Q9NXF1 929 aaPredicted RBP12.06□□□□□ -0.48
RTN3-207ENST00000536011 ALKBH4Q9NXW9 302 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 ITGB1BP2Q9UKP3 347 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 SLC12A4Q9UP95 1085 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 NPFFR2Q9Y5X5 522 aa12.06□□□□□ -0.48
RTN3-207ENST00000536011 INTS1Q8N201 2190 aaKnown RBP12.05□□□□□ -0.48
RTN3-207ENST00000536011 F8P00451 2351 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 C15orf38-AP3S2A0A0A6YYH1 394 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 EXOC1LA0A1B0GW35 172 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 HSPB2A8KAH6 182 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 TRIM49D1C9J1S8 452 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 POC1B-GALNT4F8VUJ3 575 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 TRIM3O75382 744 aaPredicted RBP12.05□□□□□ -0.48
RTN3-207ENST00000536011 CLPSP04118 112 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 RPS17P08708 135 aaKnown RBP12.05□□□□□ -0.48
RTN3-207ENST00000536011 SNRPAP09012 282 aaKnown RBP12.05□□□□□ -0.48
RTN3-207ENST00000536011 RFPL3SP0C7P2 107 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 CTAGE8P0CG41 777 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 TAC1P20366 129 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 GCKP35557 465 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 HSPB2Q16082 182 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 SGO1Q5FBB7 561 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 SLC48A1Q6P1K1 146 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 TMEM200AQ86VY9 491 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 CTAGE4Q8IX94 777 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 PM20D2Q8IYS1 436 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 ULK2Q8IYT8 1036 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 OR4F6Q8NGB9 312 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 DOK4Q8TEW6 326 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 ZNF483Q8TF39 744 aaPredicted RBP12.05□□□□□ -0.48
RTN3-207ENST00000536011 SELENOMQ8WWX9 145 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 MTBPQ96DY7 904 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 DTNBP1Q96EV8 351 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 RILPQ96NA2 401 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 ZBTB26Q9HCK0 441 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 ZNF358Q9NW07 568 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 SPRR3Q9UBC9 169 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 TNFRSF10DQ9UBN6 386 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 TRPS1Q9UHF7 1281 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 STK38LQ9Y2H1 464 aa12.05□□□□□ -0.48
RTN3-207ENST00000536011 HCFC1P51610 2035 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 A0A0G2JNJ9 132 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 WASHC1A8K0Z3 465 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 AHRRA9YTQ3 701 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 TRAPPC6AO75865 159 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 ZWINTO95229 277 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 KRT6AP02538 564 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 KRT6BP04259 564 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 ATP1B1P05026 303 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 HSD3B1P14060 373 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 NAGAP17050 411 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 CSNK2A2P19784 350 aaPredicted RBP12.04□□□□□ -0.48
RTN3-207ENST00000536011 ENDOUP21128 410 aaKnown RBP12.04□□□□□ -0.48
RTN3-207ENST00000536011 HSD3B2P26439 372 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 KRT6CP48668 564 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 FBXW4P57775 412 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 TRA2BP62995 288 aaKnown RBP12.04□□□□□ -0.48
RTN3-207ENST00000536011 RTL6Q6ICC9 239 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 WDR53Q7Z5U6 358 aaPredicted RBP12.04□□□□□ -0.48
RTN3-207ENST00000536011 SAMD14Q8IZD0 417 aaPredicted RBP12.04□□□□□ -0.48
RTN3-207ENST00000536011 ZNF615Q8N8J6 731 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 SPPL2AQ8TCT8 520 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 DCAKDQ8WVC6 231 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 ZNF592Q92610 1267 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 KLHL29Q96CT2 875 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 HSPBAP1Q96EW2 488 aa12.04□□□□□ -0.48
RTN3-207ENST00000536011 NSUN5Q96P11 429 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms