RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.43□□□□□ -0.42
LDLR-203ENST00000535915 PEX16Q9Y5Y5 336 aa12.43□□□□□ -0.42
LDLR-203ENST00000535915 XIRP2A4UGR9 3374 aa12.43□□□□□ -0.42
LDLR-203ENST00000535915 A0A1W2PP55 124 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 CACNB4O00305 520 aaPredicted RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 AQP9O43315 295 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 MED26O95402 600 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 PRKCDQ05655 676 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 RUNX3Q13761 415 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 SLC9A5Q14940 896 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 GPR19Q15760 415 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 TOR1AIP1Q5JTV8 583 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 C12orf73Q69YU5 71 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 TANGO2Q6ICL3 276 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 PODNL1Q6PEZ8 512 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 WDR53Q7Z5U6 358 aaPredicted RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 BCDIN3DQ7Z5W3 292 aaKnown RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 FAM83FQ8NEG4 500 aaPredicted RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 TTLQ8NG68 377 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 OR8J1Q8NGP2 316 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 PHOSPHO2Q8TCD6 241 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 HPS1Q92902 700 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 OPALINQ96PE5 141 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 SP140LQ9H930 580 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 MRPS30Q9NP92 439 aaKnown RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 EXOSC4Q9NPD3 245 aaKnown RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 PHPT1Q9NRX4 125 aaPredicted RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 ZSCAN32Q9NX65 697 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 QPCTLQ9NXS2 382 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 CLEC2DQ9UHP7 191 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 CFL2Q9Y281 166 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 STON1Q9Y6Q2 735 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 GPR89AB7ZAQ6 455 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 ERI3O43414 337 aaKnown RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 GPR89BP0CG08 455 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 BCL6P41182 706 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 SOX3P41225 446 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 KHKP50053 298 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 SLAMF1Q13291 335 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 C19orf48Q6RUI8 117 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 IQCF1Q8N6M8 205 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 OR8K5Q8NH50 307 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 NUAK2Q9H093 628 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 KLHL25Q9H0H3 589 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 TVP23BQ9NYZ1 205 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 EHD3Q9NZN3 535 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 SLC9A8Q9Y2E8 581 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 RPL36Q9Y3U8 105 aaKnown RBP12.42□□□□□ -0.42
LDLR-203ENST00000535915 PLEKHM1Q9Y4G2 1056 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 ATG2AQ2TAZ0 1938 aa12.42□□□□□ -0.42
LDLR-203ENST00000535915 OR52A4PA6NMU1 304 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 MAN2B1O00754 1011 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 SCG5P05408 212 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 HOXB3P14651 431 aaPredicted RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 ALOX12P18054 663 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TRIM23P36406 574 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 BUD31P41223 144 aaPredicted RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 ARPC4P59998 168 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 RHAGQ02094 409 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 LASP1Q14847 261 aaKnown RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 KCNJ8Q15842 424 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TMEM35AQ53FP2 167 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TMEM201Q5SNT2 666 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 MEDAGQ5VYS4 303 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 VITQ6UXI7 678 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TRNT1Q96Q11 434 aaKnown RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 FUZQ9BT04 418 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 SPATA5L1Q9BVQ7 753 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TAPBPLQ9BX59 468 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 CTPS2Q9NRF8 586 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 SACM1LQ9NTJ5 587 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 UGT2A1Q9Y4X1 527 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 NOX1Q9Y5S8 564 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 A0A1W2PRQ8 180 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 C4orf51C9J302 202 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 CSO75390 466 aaKnown RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 GPX5O75715 221 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 ZNF91Q05481 1191 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.41□□□□□ -0.42
LDLR-203ENST00000535915 FGL2Q14314 439 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 SPHARQ15513 63 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 ZNF750Q32MQ0 723 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 SPANXN2Q5MJ10 180 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 CCDC116Q8IYX3 515 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 OR2L8Q8NGY9 312 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 BBS10Q8TAM1 723 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 KCNS3Q9BQ31 491 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 CNPPD1Q9BV87 410 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TSSK6Q9BXA6 273 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 RSPH9Q9H1X1 276 aaPredicted RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 CPNE5Q9HCH3 593 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 HHATLQ9HCP6 504 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 FBXW2Q9UKT8 454 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 RANBP2P49792 3224 aaKnown RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 PDZK1P1A8MUH7 402 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 FAM47E-STBD1D6RA91 191 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 SCAMP1O15126 338 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 PGRMC2O15173 223 aa12.41□□□□□ -0.42
LDLR-203ENST00000535915 TLX2O43763 284 aaPredicted RBP12.41□□□□□ -0.42
LDLR-203ENST00000535915 SLITRK5O94991 958 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms