RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GIMD1P0DJR0 217 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PIGAP37287 484 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 RPL34P49207 117 aaKnown RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 AP2S1P53680 142 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PON3Q15166 354 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 TCEAL5Q5H9L2 206 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 SAMD12Q8N8I0 201 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 CYB561A3Q8NBI2 242 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 OR52P1PQ8NH57 321 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 JSRP1Q96MG2 331 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 OR2M4Q96R27 311 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 NDC1Q9BTX1 674 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GSDMCQ9BYG8 508 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 TBL1XR1Q9BZK7 514 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 CUEDC1Q9NWM3 386 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 NFKBIL1Q9UBC1 381 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 ALPK2Q86TB3 2170 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 TMEM202A6NGA9 273 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 TMEM150CB9EJG8 249 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 SLITRK5O94991 958 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GRPRP30550 384 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 RAB28P51157 221 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GBX2P52951 348 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 ERVFC1P60507 584 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 MGAT3Q09327 533 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PUM1Q14671 1186 aaKnown RBP eCLIP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PTGES3Q15185 160 aaKnown RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PROX2Q3B8N5 592 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 IKBIPQ70UQ0 350 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PRSS48Q7RTY5 328 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GALNTL5Q7Z4T8 443 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 ADGRD2Q7Z7M1 963 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 GPR149Q86SP6 731 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 POLMQ9NP87 494 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 PHF11Q9UIL8 331 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 MRTO4Q9UKD2 239 aaKnown RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 CACNA1IQ9P0X4 2223 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 FAM227AF5H4B4 570 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 RNGTTO60942 597 aaKnown RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 LHCGRP22888 699 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 HRH2P25021 359 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 AK4P27144 223 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 MAD2L1BPQ15013 274 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-204ENST00000519664 FLYWCH1Q4VC44 716 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 TMEM31Q5JXX7 168 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 OR4C11Q6IEV9 310 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF613Q6PF04 617 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 AMIGO1Q86WK6 493 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 THEM6Q8WUY1 208 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 DGAT2Q96PD7 388 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 KLHL31Q9H511 634 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 RDH14Q9HBH5 336 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 BTNL2Q9UIR0 455 aa11.13□□□□□ -0.63
SYNPO-204ENST00000519664 ADAMTSL1Q8N6G6 1762 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 PAPPAQ13219 1627 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 CPED1A4D0V7 1026 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 AQP9O43315 295 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 RAB36O95755 333 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 F11P03951 625 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 HMGN2P05204 90 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 NAT1P18440 290 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 TM4SF4P48230 202 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 RPS21P63220 83 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 OLFML2AQ68BL7 652 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 SLC36A4Q6YBV0 504 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 RASSF6Q6ZTQ3 369 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 CEP68Q76N32 757 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 NRMQ8IXM6 262 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 OR8H3Q8N146 312 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 METTL21AQ8WXB1 218 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 KCNN1Q92952 543 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 MMABQ96EY8 250 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 CNDP2Q96KP4 475 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 DMRT3Q9NQL9 472 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 HSPB11Q9Y547 144 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 FAAHO00519 579 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 IGLV3-25P01717 112 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 FHP07954 510 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 PRKACAP17612 351 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 SSTR4P31391 388 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 SOX9P48436 509 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 FCRLBQ6BAA4 426 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 TMPRSS9Q7Z410 1059 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 PDLIM5Q96HC4 596 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 ADAD1Q96M93 576 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 SLC17A9Q9BYT1 436 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 TRIM36Q9NQ86 728 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 CKLFQ9UBR5 152 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 FKBP7Q9Y680 259 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 NPIPA5A0A0B4J1W7 369 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 NPIPA7E9PJI5 369 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 AP1G1O43747 822 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 DBIP07108 87 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 NPIPA8P0DM63 369 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 CERS1P27544 350 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 EIF1AXP47813 144 aaKnown RBP11.12□□□□□ -0.63
SYNPO-204ENST00000519664 MASP1P48740 699 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 CPZQ66K79 652 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 GALNT7Q86SF2 657 aa11.12□□□□□ -0.63
SYNPO-204ENST00000519664 PAPD5Q8NDF8 572 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms