RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SLC12A4Q9UP95 1085 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 C2CD3Q4AC94 2353 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 CPMP14384 443 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 ZFP36L2P47974 494 aaKnown RBP19.79■□□□□ 0.76
USP40-215ENST00000484528 MAPK12P53778 367 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 TBL3Q12788 808 aaKnown RBP19.79■□□□□ 0.76
USP40-215ENST00000484528 RPS6KA2Q15349 733 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 NNATQ16517 81 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 C6orf163Q5TEZ5 329 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 LETMD1Q6P1Q0 360 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 COMMD6Q7Z4G1 85 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 LIX1LQ8IVB5 337 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 DMRTC2Q8IXT2 367 aaPredicted RBP19.79■□□□□ 0.76
USP40-215ENST00000484528 METTL4Q8N3J2 472 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 LIX1Q8N485 282 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 ZNF615Q8N8J6 731 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 MRPL57Q9BQC6 102 aaKnown RBP19.79■□□□□ 0.76
USP40-215ENST00000484528 OR10A5Q9H207 317 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 MRPL46Q9H2W6 279 aaKnown RBP19.79■□□□□ 0.76
USP40-215ENST00000484528 AHSPQ9NZD4 102 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 B4GALT7Q9UBV7 327 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 DTX4Q9Y2E6 619 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 KIAA1549Q9HCM3 1950 aa19.79■□□□□ 0.76
USP40-215ENST00000484528 A8MT66 165 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 TP53I11O14683 189 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 PDYNP01213 254 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 SBK3P0C264 359 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 COL6A2P12110 1019 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 CAPN3P20807 821 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 FUT7Q11130 342 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 GGTA1PQ4G0N0 100 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 TEX35Q5T0J7 233 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 PAGE2Q7Z2X7 111 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 NEIL3Q8TAT5 605 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 ZNF483Q8TF39 744 aaPredicted RBP19.78■□□□□ 0.76
USP40-215ENST00000484528 TSPYL1Q9H0U9 437 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 ADAM29Q9UKF5 820 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 NPFFR2Q9Y5X5 522 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 AKAP9Q99996 3911 aa19.78■□□□□ 0.76
USP40-215ENST00000484528 C15orf38-AP3S2A0A0A6YYH1 394 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 FOXO6A8MYZ6 492 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 TRIM3O75382 744 aaPredicted RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 ERAL1O75616 437 aaKnown RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 OTCP00480 354 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 HOXD4P09016 255 aaPredicted RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 FEN1P39748 380 aaKnown RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 GALNT1Q10472 559 aaPredicted RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 MYBPHQ13203 477 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 TCHHL1Q5QJ38 904 aaPredicted RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 TMEM198Q66K66 360 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 FAM180BQ6P0A1 224 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 FAM111BQ6SJ93 734 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 WDR53Q7Z5U6 358 aaPredicted RBP19.77■□□□□ 0.76
USP40-215ENST00000484528 SPPL2AQ8TCT8 520 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 SELENOMQ8WWX9 145 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 ADIPOR1Q96A54 375 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 TP53INP1Q96A56 240 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 RILPQ96NA2 401 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 ZNF559Q9BR84 538 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 BRINP2Q9C0B6 783 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 PCDHA9Q9Y5H5 950 aa19.77■□□□□ 0.76
USP40-215ENST00000484528 A0A087WUV0 522 aaPredicted RBP19.76■□□□□ 0.75
USP40-215ENST00000484528 CAPN14A8MX76 684 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 TRAPPC6AO75865 159 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 OR4F21O95013 312 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 PORP16435 677 aaPredicted RBP19.76■□□□□ 0.75
USP40-215ENST00000484528 GPX3P22352 226 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 CNTFP26441 200 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 MASP1P48740 699 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 WNT3P56703 355 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 NRG3P56975 720 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 DUSP2Q05923 314 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 DUSP8Q13202 625 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 EXOSC7Q15024 291 aaKnown RBP19.76■□□□□ 0.75
USP40-215ENST00000484528 TBCELQ5QJ74 424 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 C10orf62Q5T681 223 aaPredicted RBP19.76■□□□□ 0.75
USP40-215ENST00000484528 SLC48A1Q6P1K1 146 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 TMEM200AQ86VY9 491 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 ULK2Q8IYT8 1036 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 TMEM151AQ8N4L1 468 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 SIMC1Q8NDZ2 872 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 TRPC4APQ8TEL6 797 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 KLHL29Q96CT2 875 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 NXF5Q9H1B4 397 aaKnown RBP19.76■□□□□ 0.75
USP40-215ENST00000484528 ACKR4Q9NPB9 350 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 QPCTLQ9NXS2 382 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 ZNF180Q9UJW8 692 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 ZNF225Q9UK10 706 aa19.76■□□□□ 0.75
USP40-215ENST00000484528 EXOC1LA0A1B0GW35 172 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 C1orf226A1L170 272 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 KDM4EB2RXH2 506 aaPredicted RBP19.75■□□□□ 0.75
USP40-215ENST00000484528 CTAGE8P0CG41 777 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 GABRA1P14867 456 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 S1PR1P21453 382 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 DEKP35659 375 aaKnown RBP19.75■□□□□ 0.75
USP40-215ENST00000484528 ALDH9A1P49189 494 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 TMED10P49755 219 aaKnown RBP19.75■□□□□ 0.75
USP40-215ENST00000484528 DLX5P56178 289 aa19.75■□□□□ 0.75
USP40-215ENST00000484528 SNTB1Q13884 538 aaKnown RBP19.75■□□□□ 0.75
USP40-215ENST00000484528 FNDC7Q5VTL7 733 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms