RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PTGER4P35408 488 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 PRKAA2P54646 552 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 TFF3Q07654 80 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 PRICKLE4Q2TBC4 344 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 BICRALQ6AI39 1079 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 FAM111BQ6SJ93 734 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 GALNT12Q8IXK2 581 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 LRRC25Q8N386 305 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 OR5M9Q8NGP3 310 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 CHTF18Q8WVB6 975 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 C11orf24Q96F05 449 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 TREX2Q9BQ50 279 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 TP63Q9H3D4 680 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 GSTO2Q9H4Y5 243 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 HEY2Q9UBP5 337 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SNX6Q9UNH7 406 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 RNF6Q9Y252 685 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 FAM215AQ9Y5M1 114 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 FREM3P0C091 2139 aa12.96□□□□□ -0.33
UPF3A-204ENST00000475218 C2orf92A0A1B0GVN3 265 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 ATP6AP2A0A1C7CYW4 349 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 G3V2L1 256 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 UBFD1O14562 309 aaKnown RBP12.96□□□□□ -0.34
UPF3A-204ENST00000475218 ATP6AP2O75787 350 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 SUPT7LO94864 414 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 PYGBP11216 843 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 IMPDH1P20839 514 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 ATP5F1P24539 256 aaPredicted RBP12.96□□□□□ -0.34
UPF3A-204ENST00000475218 NUP107P57740 925 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 FBXW4P57775 412 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 FNDC7Q5VTL7 733 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 DESI1Q6ICB0 168 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 PAGE2Q7Z2X7 111 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 LCA5Q86VQ0 697 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 FAM13CQ8NE31 585 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 OR5M3Q8NGP4 307 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 TP53INP1Q96A56 240 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 L3HYPDHQ96EM0 354 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 CNRIP1Q96F85 164 aaPredicted RBP12.96□□□□□ -0.34
UPF3A-204ENST00000475218 KCNA7Q96RP8 456 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 SMC6Q96SB8 1091 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 ACPTQ9BZG2 426 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 OR10A5Q9H207 317 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 NPDC1Q9NQX5 325 aaPredicted RBP12.96□□□□□ -0.34
UPF3A-204ENST00000475218 AHSPQ9NZD4 102 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 MAT2BQ9NZL9 334 aa12.96□□□□□ -0.34
UPF3A-204ENST00000475218 OR14I1A6ND48 311 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 AQP7O14520 342 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 TRIM3O75382 744 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-204ENST00000475218 ATP1B1P05026 303 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 COX6B1P14854 86 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 PORP16435 677 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-204ENST00000475218 IGFBP2P18065 325 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 GPX3P22352 226 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 FEN1P39748 380 aaKnown RBP12.95□□□□□ -0.34
UPF3A-204ENST00000475218 MAP4K2Q12851 820 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 LTB4RQ15722 352 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 LGSNQ5TDP6 509 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 GPRIN3Q6ZVF9 776 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 CCDC71Q8IV32 467 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-204ENST00000475218 ACMSDQ8TDX5 336 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 CTHRC1Q96CG8 243 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 UCK2Q9BZX2 261 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 ENKD1Q9H0I2 346 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 NXF5Q9H1B4 397 aaKnown RBP12.95□□□□□ -0.34
UPF3A-204ENST00000475218 TNFRSF12AQ9NP84 129 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 ZFP64Q9NPA5 681 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 CNIH4Q9P003 139 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 PSMC3IPQ9P2W1 217 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-204ENST00000475218 VPS29Q9UBQ0 182 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 TBK1Q9UHD2 729 aa12.95□□□□□ -0.34
UPF3A-204ENST00000475218 C1orf226A1L170 272 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 SUSD5O60279 629 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 CBX7O95931 251 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 NT5EP21589 574 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 SERPINB3P29508 390 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 FOXA1P55317 472 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 KCNJ2P63252 427 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 HMGCS1Q01581 520 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 PMPCAQ10713 525 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 SLC10A1Q14973 349 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 EXOSC7Q15024 291 aaKnown RBP12.94□□□□□ -0.34
UPF3A-204ENST00000475218 RASA2Q15283 850 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 PAOXQ6QHF9 649 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 DND1Q8IYX4 353 aaKnown RBP12.94□□□□□ -0.34
UPF3A-204ENST00000475218 PRR22Q8IZ63 422 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 ADCY4Q8NFM4 1077 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 APIPQ96GX9 242 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 SLC6A15Q9H2J7 730 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 C12orf65Q9H3J6 166 aaKnown RBP12.94□□□□□ -0.34
UPF3A-204ENST00000475218 TIMM22Q9Y584 194 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 NPFFR2Q9Y5X5 522 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 ANKRD33BA6NCL7 494 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 TOXO94900 526 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 GSTA1P08263 222 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 HSD3B1P14060 373 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 TAC1P20366 129 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 HSD3B2P26439 372 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 ACVR2AP27037 513 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms