RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NPIPA5	A0A0B4J1W7	369 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	TMEM89	A2RUT3	159 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	FOXI3	A8MTJ6	420 aa	Predicted RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	NPIPA5	E9PKD4	350 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	E2F3	O00716	465 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	BUB1	O43683	1085 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	SSX5	O60225	188 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	GALR3	O60755	368 aa	Predicted RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	MT-ND1	P03886	318 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	MELTF	P08582	738 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ETS1	P14921	441 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	GNS	P15586	552 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	GATA1	P15976	413 aa	Predicted RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	GAP43	P17677	238 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	MAGEA4	P43358	317 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	NPY2R	P49146	381 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ATXN3	P54252	364 aa	Predicted RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	KRTAP10-7	P60409	375 aa	Predicted RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	CARTPT	Q16568	116 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	TOR1AIP1	Q5JTV8	583 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF506	Q5JVG8	444 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	LINC00242	Q5T6M2	205 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	OR6B2	Q6IFH4	312 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ARMCX5	Q6P1M9	558 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	CWC27	Q6UX04	472 aa	Known RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	WDR88	Q6ZMY6	472 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	MOB2	Q70IA6	237 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ADGRD2	Q7Z7M1	963 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	KDM8	Q8N371	416 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	LRRC17	Q8N6Y2	441 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	RELL2	Q8NC24	303 aa	Predicted RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	DQX1	Q8TE96	717 aa	Known RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	FAM222B	Q8WU58	562 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	CCDC51	Q96ER9	411 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	C14orf79	Q96F83	325 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	RAB11FIP5	Q9BXF6	653 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ADNP	Q9H2P0	1102 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	CNOT2	Q9NZN8	540 aa	Known RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	SPAST	Q9UBP0	616 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	EIF3K	Q9UBQ5	218 aa	Known RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF346	Q9UL40	294 aa	Known RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	EMCN	Q9ULC0	261 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	PIN4	Q9Y237	131 aa	Known RBP	3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	PLEKHA6	Q9Y2H5	1048 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF175	Q9Y473	711 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	CSAG2	Q9Y5P2	127 aa		3.04	□□□□□ -1.92
PTCD3-209	ENST00000472044	RPGRIP1L	Q68CZ1	1315 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	TEX48	A0A1B0GUV7	120 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	SHISA9	B4DS77	424 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	CYB561D2	O14569	222 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	CRLF1	O75462	422 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	REN	P00797	406 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	OAS1	P00973	400 aa	Known RBP	3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	FCGR3A	P08637	254 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	TRIM23	P36406	574 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	MATK	P42679	507 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	RGS19	P49795	217 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	IL1RL1	Q01638	556 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	NME3	Q13232	169 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	C17orf58	Q2M2W7	97 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	ACSF3	Q4G176	576 aa	Predicted RBP	3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	LCE1F	Q5T754	118 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	TAF3	Q5VWG9	929 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	IL23R	Q5VWK5	629 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	REP15	Q6BDI9	236 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	RFWD3	Q6PCD5	774 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	ATRAID	Q6UW56	229 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	DPY19L2P2	Q6ZN68	376 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	TIPARP	Q7Z3E1	657 aa	Known RBP	3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	RANBP3L	Q86VV4	465 aa	Predicted RBP	3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	AMZ2	Q86W34	360 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	RNF148	Q8N7C7	305 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	POM121L12	Q8N7R1	296 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF491	Q8N8L2	437 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	GPATCH11	Q8N954	259 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	MLKL	Q8NB16	471 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	CNNM3	Q8NE01	707 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	MRPL38	Q96DV4	380 aa	Known RBP	3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	TTYH2	Q9BSA4	534 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	NDUFAF3	Q9BU61	184 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	GPR174	Q9BXC1	333 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	C1orf21	Q9H246	121 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	ZNF446	Q9NWS9	450 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	SEC14L4	Q9UDX3	406 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	MLX	Q9UH92	298 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	STYXL1	Q9Y6J8	313 aa		3.03	□□□□□ -1.92
PTCD3-209	ENST00000472044	PRPSAP2	O60256	369 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	STK17B	O94768	372 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	ECD	O95905	644 aa	Predicted RBP	3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	MT-ATP6	P00846	226 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	SNRPC	P09234	159 aa	Known RBP	3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	FOLR2	P14207	255 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	CCNA2	P20248	432 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	MAPK3	P27361	379 aa	Predicted RBP	3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	CALML3	P27482	149 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	TMOD1	P28289	359 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	PPP2R1B	P30154	601 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	AKT2	P31751	481 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	ELK3	P41970	407 aa		3.02	□□□□□ -1.93
PTCD3-209	ENST00000472044	PTGER3	P43115	390 aa		3.02	□□□□□ -1.93

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