RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MYOTQ9UBF9 498 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF639Q9UID6 485 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 KMT2BQ9UMN6 2715 aaPredicted RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 DYTNA2CJ06 578 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 OR6C76A6NM76 312 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 CDK2AP1O14519 115 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ANKRD28O15084 1053 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 POLR3GO15318 223 aaPredicted RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 SLITRK5O94991 958 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 WDPCPO95876 746 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 LAMP1P11279 417 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 FRKP42685 505 aaPredicted RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ARG2P78540 354 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 MRPS35P82673 323 aaKnown RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 NFATC3Q12968 1075 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 LCE2DQ5TA82 110 aaPredicted RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 SLC29A4Q7RTT9 530 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 PTRH1Q86Y79 214 aaKnown RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 C9orf40Q8IXQ3 194 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 NATD1Q8N6N6 113 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF615Q8N8J6 731 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 TEX19Q8NA77 164 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 NUDT8Q8WV74 236 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 KAT2AQ92830 837 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 COQ8BQ96D53 544 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ERP27Q96DN0 273 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ZBED6CLQ96FA7 236 aaPredicted RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 EBF4Q9BQW3 602 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 CCDC28BQ9BUN5 200 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 RNF32Q9H0A6 362 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 OR10A5Q9H207 317 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 LIN28AQ9H9Z2 209 aaKnown RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 TCF7L2Q9NQB0 619 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ACSS1Q9NUB1 689 aaPredicted RBP11.09□□□□□ -0.63
VPS13D-204ENST00000469054 ATAD3AQ9NVI7 634 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 AIG1Q9NVV5 245 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 CFL2Q9Y281 166 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 GPR45Q9Y5Y3 372 aa11.09□□□□□ -0.63
VPS13D-204ENST00000469054 A0A087WV62 115 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 EIF4E1BA6NMX2 242 aaKnown RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 WWP2O00308 870 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 PLOD2O00469 737 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 FCHO1O14526 889 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 UBDO15205 165 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 PLOD3O60568 738 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 ITGA10O75578 1167 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 BCAS2O75934 225 aaPredicted RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 CBX7O95931 251 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 IDO1P14902 403 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 CD97P48960 835 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 MANFP55145 182 aaKnown RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 KLRB1Q12918 225 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 DUSP8Q13202 625 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 EXOSC7Q15024 291 aaKnown RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 MLC1Q15049 377 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 EBPQ15125 230 aaKnown RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 RPS6KA2Q15349 733 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 GSTA3Q16772 222 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 NADK2Q4G0N4 442 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 TMEM198Q66K66 360 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 C16orf47Q6ZP98 133 aaPredicted RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 Q6ZS92 163 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 ZNF551Q7Z340 670 aaPredicted RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 CAMKMTQ7Z624 323 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 SIMC1Q8NDZ2 872 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 CATSPER1Q8NEC5 780 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 OR7G2Q8NG99 324 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 OR52R1Q8NGF1 315 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 ZFP28Q8NHY6 868 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 STON2Q8WXE9 905 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 THOC1Q96FV9 657 aaKnown RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 GAL3ST4Q96RP7 486 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 SIKE1Q9BRV8 207 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 DUSP26Q9BV47 211 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 BHLHE41Q9C0J9 482 aaPredicted RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 PRODH2Q9UF12 536 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 BCAP29Q9UHQ4 241 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 DCTN4Q9UJW0 460 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 YARS2Q9Y2Z4 477 aaKnown RBP11.08□□□□□ -0.64
VPS13D-204ENST00000469054 CSAG2Q9Y5P2 127 aa11.08□□□□□ -0.64
VPS13D-204ENST00000469054 C2orf92A0A1B0GVN3 265 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 A0A1W2PRB8 838 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 OR5H15A6NDH6 313 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 PRAMEF2O60811 474 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 OR2J2O76002 312 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 F10P00742 488 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 PRB1P04280 392 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 VIMP08670 466 aaKnown RBP11.07□□□□□ -0.64
VPS13D-204ENST00000469054 IFI6P09912 130 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 TRHRP34981 398 aaPredicted RBP11.07□□□□□ -0.64
VPS13D-204ENST00000469054 GPC1P35052 558 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 MC3RP41968 323 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 CYB561P49447 251 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 EMDP50402 254 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 ST13P50502 369 aaKnown RBP11.07□□□□□ -0.64
VPS13D-204ENST00000469054 TNFSF10P50591 281 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 CLNS1AP54105 237 aaKnown RBP11.07□□□□□ -0.64
VPS13D-204ENST00000469054 NME5P56597 212 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 UFM1P61960 85 aa11.07□□□□□ -0.64
VPS13D-204ENST00000469054 SRSF11Q05519 484 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms