RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ANKDD1AQ495B1 522 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 ARHGEF16Q5VV41 709 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 FKBP1CQ5VVH2 108 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 EMBQ6PCB8 327 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 B3GLCTQ6Y288 498 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 NIPA1Q7RTP0 329 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 TRMT1LQ7Z2T5 733 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 PEX26Q7Z412 305 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 LCA5Q86VQ0 697 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SYCE1Q8N0S2 351 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 DAW1Q8N136 415 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 DNAJC22Q8N4W6 341 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 METTL13Q8N6R0 699 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 FAM76AQ8TAV0 307 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 PHLDA1Q8WV24 401 aaPredicted RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 HSD17B8Q92506 261 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 GGHQ92820 318 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 BICD1Q96G01 975 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SAMD8Q96LT4 415 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 ACCSQ96QU6 501 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 PRMT1Q99873 361 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 TMEM245Q9H330 911 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 RPAP3Q9H6T3 665 aaPredicted RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 RPF1Q9H9Y2 349 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 MYOZ2Q9NPC6 264 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 NGBQ9NPG2 151 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 PPANQ9NQ55 473 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 GDF3Q9NR23 364 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 DMAC2Q9NW81 257 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 NDUFA13Q9P0J0 144 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SLC12A6Q9UHW9 1150 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 STUB1Q9UNE7 303 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 UBIAD1Q9Y5Z9 338 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SLX4Q8IY92 1834 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZSCAN5CA6NGD5 496 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 CCDC169A6NNP5 214 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 TMEM110-MUSTN1A8MSY1 372 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PGRMC1O00264 195 aaKnown RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 SLC16A4O15374 487 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PSMD3O43242 534 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 SYNGR3O43761 229 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PEX11AO75192 247 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PRKRAO75569 313 aaKnown RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 AKR7A3O95154 331 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PIGNO95427 931 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PDGFBP01127 241 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 APOHP02749 345 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 PGK2P07205 417 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 IVLP07476 585 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 KRT5P13647 590 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ELAVL4P26378 380 aaKnown RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 CHRNA3P32297 505 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 CDKN1AP38936 164 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 GCLMP48507 274 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PEX3P56589 373 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PSMC5P62195 406 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 RPS6P62753 249 aaKnown RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 KCNJ10P78508 379 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 RPL24P83731 157 aaKnown RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 SPP2Q13103 211 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 TRADDQ15628 312 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZNF542PQ5EBM4 170 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 DCAF10Q5QP82 559 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 STXBP5Q5T5C0 1151 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 RAET1GQ6H3X3 334 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZNF770Q6IQ21 691 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 LRRC31Q6UY01 552 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 MACC1Q6ZN28 852 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 IL17RELQ6ZVW7 336 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PRUNE1Q86TP1 453 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 NT5DC3Q86UY8 548 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PLD3Q8IV08 490 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 C12orf56Q8IXR9 622 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZNF441Q8N8Z8 693 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 LEMD2Q8NC56 503 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 OLIG1Q8TAK6 271 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ACTRT1Q8TDG2 376 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 GRHL3Q8TE85 626 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 CTNNBL1Q8WYA6 563 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 RFT1Q96AA3 541 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ULK4Q96C45 1275 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 LGALS12Q96DT0 336 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 MRPL38Q96DV4 380 aaKnown RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZBED3Q96IU2 234 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 NSL1Q96IY1 281 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 VPS39Q96JC1 886 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 C17orf77Q96MU5 243 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZIM3Q96PE6 472 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 IWS1Q96ST2 819 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 MAP3K3Q99759 626 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 AGPAT1Q99943 283 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 CBWD1Q9BRT8 395 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ALKBH7Q9BT30 221 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 TIPINQ9BVW5 301 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 RAB17Q9H0T7 212 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 THAP2Q9H0W7 228 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 DEFB129Q9H1M3 183 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 CARD9Q9H257 536 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 GAREM1Q9H706 876 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 SLC38A10Q9HBR0 1119 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms