RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CEP85LQ5SZL2 805 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 FAM180BQ6P0A1 224 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 BNC2Q6ZN30 1099 aaPredicted RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 GK5Q6ZS86 529 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 CROCCP2Q86T23 111 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 FJX1Q86VR8 437 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF615Q8N8J6 731 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 OR2M7Q8NG81 312 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 C16orf52Q8NHV5 167 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 TP53INP1Q96A56 240 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 EXOSC8Q96B26 276 aaKnown RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 SPACA9Q96E40 222 aaPredicted RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF681Q96N22 645 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 FAM173AQ9BQD7 235 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 CENPHQ9H3R5 247 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 DEPPQ9NTK1 212 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 MAT2BQ9NZL9 334 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 EHD3Q9NZN3 535 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 BCAP29Q9UHQ4 241 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 WBP11Q9Y2W2 641 aaKnown RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 POLR3HQ9Y535 204 aaPredicted RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 WIPF3A6NGB9 483 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 G3V3Y1 287 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 ACOT7O00154 380 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 TYROBPO43914 113 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 HS6ST1O60243 411 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 SLC19A2O60779 497 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 SEC22BO75396 215 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 CHRNGP07510 517 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 BPGMP07738 259 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 FBXO45P0C2W1 286 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 NEFHP12036 1026 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 PRPH2P23942 346 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 SERPINB5P36952 375 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 CA7P43166 264 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 NRG3P56975 720 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 DUSP2Q05923 314 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 MGAT2Q10469 447 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 ARL13AQ5H913 290 aaPredicted RBP14.02□□□□□ -0.17
LIMS3-201ENST00000437679 SLC22A10Q63ZE4 541 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 KANK2Q63ZY3 851 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 NOXRED1Q6NXP6 359 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 FAM111BQ6SJ93 734 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 LYPD8Q6UX82 237 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 RGS9BPQ6ZS82 235 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 RNF165Q6ZSG1 346 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 FAM47EQ6ZV65 393 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 CCDC116Q8IYX3 515 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF441Q8N8Z8 693 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 FAM13CQ8NE31 585 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 ADCY4Q8NFM4 1077 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 RELTQ969Z4 430 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 LRTM1Q9HBL6 345 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 MYNNQ9NPC7 610 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 MIEF1Q9NQG6 463 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 SLC35C2Q9NQQ7 365 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 C1orf109Q9NX04 203 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 SUCOQ9UBS9 1254 aaKnown RBP14.02□□□□□ -0.17
LIMS3-201ENST00000437679 CCL27Q9Y4X3 112 aa14.02□□□□□ -0.17
LIMS3-201ENST00000437679 PINLYPA6NC86 204 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 NPIPB8E9PQR5 432 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ERLIN1O75477 346 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 FGF4P08620 206 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 MYZAPP0CAP1 466 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 CCL3P10147 92 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 GP1BBP13224 206 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ABOP16442 354 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 DDCP20711 480 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 S1PR1P21453 382 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 GPX3P22352 226 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 PTGER1P34995 402 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 PPIAP62937 165 aaKnown RBP14.01□□□□□ -0.17
LIMS3-201ENST00000437679 EXOSC7Q15024 291 aaKnown RBP14.01□□□□□ -0.17
LIMS3-201ENST00000437679 LTB4RQ15722 352 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ZCCHC23Q6ZST2 131 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 IKBIPQ70UQ0 350 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 SLC22A16Q86VW1 577 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 SPPL2CQ8IUH8 684 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 CLYBLQ8N0X4 340 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 C17orf47Q8NEP4 570 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 PPP1R14CQ8TAE6 165 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF675Q8TD23 568 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 PAQR8Q8TEZ7 354 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ADIPOR1Q96A54 375 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 CTHRC1Q96CG8 243 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ZIM3Q96PE6 472 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 BBS4Q96RK4 519 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 SSU72Q9NP77 194 aaKnown RBP14.01□□□□□ -0.17
LIMS3-201ENST00000437679 CNIH4Q9P003 139 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 PRODH2Q9UF12 536 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF639Q9UID6 485 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 SH3BGRL2Q9UJC5 107 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 TRAF6Q9Y4K3 522 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 PTGDR2Q9Y5Y4 395 aa14.01□□□□□ -0.17
LIMS3-201ENST00000437679 NINQ8N4C6 2090 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 PCNX1Q96RV3 2341 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 A0A0G2JMM0 328 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 A0A1W2PPB8 328 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 A0A1W2PRS3 328 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 A1L4Q6 167 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms