RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TPGS1Q6ZTW0 290 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ASB18Q6ZVZ8 466 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ZBTB44Q8NCP5 570 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 NEIL3Q8TAT5 605 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CLEC4MQ9H2X3 399 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 SGK2Q9HBY8 427 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SEMA3GQ9NS98 782 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 NUDT15Q9NV35 164 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GULP1Q9UBP9 304 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 PADI3Q9ULW8 664 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 TRAV6A0A075B6T7 132 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GABRPO00591 440 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SH3BP5O60239 455 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GPR37L1O60883 481 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SERPINI2O75830 405 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 H1F0P07305 194 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 MPC1LP0DKB6 136 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 PRKACAP17612 351 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CD52P31358 61 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CCT3P49368 545 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 DGKGP49619 791 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CCL23P55773 120 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 INSL4Q14641 139 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 RPS26P11Q5JNZ5 115 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 NDUFAF5Q5TEU4 345 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 THOC6Q86W42 341 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 MARCH9Q86YJ5 346 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CBARPQ8N350 705 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 OR8K5Q8NH50 307 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SLC7A13Q8TCU3 470 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 RFT1Q96AA3 541 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 THAP7Q9BT49 309 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 OR51J1Q9H342 316 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 C11orf49Q9H6J7 331 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CWH43Q9H720 699 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 LYARQ9NX58 379 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 CENPFP49454 3210 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 MTMR11A4FU01 709 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 A8MX80 341 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 SLC16A5O15375 505 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 NDUFA2O43678 99 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 CELF2O95319 508 aaKnown RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 FURINP09958 794 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 CCND3P30281 292 aaPredicted RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 AP1S1P61966 158 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 MC1RQ01726 317 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 ZNF763Q0D2J5 394 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 PDE7AQ13946 482 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 GINS1Q14691 196 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 SPDYE7PQ495Y7 208 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 REEP3Q6NUK4 255 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 LIPIQ6XZB0 460 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 LUZP2Q86TE4 346 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 ZNF280BQ86YH2 543 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 RBM45Q8IUH3 476 aaKnown RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 RNFT2Q96EX2 444 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 OR2M2Q96R28 347 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 GSX2Q9BZM3 304 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 TM6SF2Q9BZW4 377 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 NOD1Q9Y239 953 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 CACNG2Q9Y698 323 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 CEP350Q5VT06 3117 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 SRPRAP08240 638 aaKnown RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 SYPP08247 313 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 ZP3P21754 424 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 GIPRP48546 466 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 DSTNP60981 165 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 NTRK2Q16620 822 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 PRSS53Q2L4Q9 553 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 OTOP2Q7RTS6 562 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 TSPAN33Q86UF1 283 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 NR2C2APQ86WQ0 139 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 RASGRP3Q8IV61 690 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 SLC30A8Q8IWU4 369 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 MS4A15Q8N5U1 240 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 OR7G3Q8NG95 312 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 OR4D11Q8NGI4 311 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 OTULINQ96BN8 352 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 CHFRQ96EP1 664 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 OTUB1Q96FW1 271 aaPredicted RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 PDXPQ96GD0 296 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 MS4A3Q96HJ5 214 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 TEFMQ96QE5 360 aaKnown RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 OR4K3Q96R72 315 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 WFDC6Q9BQY6 131 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 TMED9Q9BVK6 235 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 MVB12BQ9H7P6 319 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 CYSLTR2Q9NS75 346 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 IMP3Q9NV31 184 aaKnown RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 ACAD8Q9UKU7 415 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 EXOSC1Q9Y3B2 195 aaKnown RBP10.13□□□□□ -0.79
USP54-204ENST00000422491 KCNMB2Q9Y691 235 aa10.13□□□□□ -0.79
USP54-204ENST00000422491 IGLV3-16A0A075B6K0 115 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 A0A1W2PPL8 197 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 K7ERQ8 282 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 PRODHO43272 600 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 HRO43593 1189 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 GJB5O95377 273 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 HLA-DPB1P04440 258 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ACSM4P0C7M7 580 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms