RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZNF675Q8TD23 568 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 FIG4Q92562 907 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 RIT1Q92963 219 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 FKBP10Q96AY3 582 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 THUMPD1Q9NXG2 353 aaKnown RBP16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 ACTR3BQ9P1U1 418 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 GMPR2Q9P2T1 348 aaKnown RBP16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 CTSFQ9UBX1 484 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 MKL2Q9ULH7 1088 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 PLOD2O00469 737 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 ARPC2O15144 300 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 COQ9O75208 318 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 CEACAM1P13688 526 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 ETFAP13804 333 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 MATN1P21941 496 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 RORAP35398 523 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 ETV5P41161 510 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 CASP9P55211 416 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 IGLV3-21P80748 117 aaPredicted RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 MRPS35P82673 323 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 TXNL4AP83876 142 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 PUM1Q14671 1186 aaKnown RBP eCLIP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 ZNF628Q5EBL2 1059 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 TNFAIP8L2Q6P589 184 aaPredicted RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 CYP2R1Q6VVX0 501 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 MED25Q71SY5 747 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 OVCH1Q7RTY7 1134 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 CALHM3Q86XJ0 350 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 PTRH1Q86Y79 214 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 SHISA5Q8N114 240 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 VWA5B2Q8N398 1253 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 C11orf65Q8NCR3 313 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 SLC26A7Q8TE54 656 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 FAM162AQ96A26 154 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 PPWD1Q96BP3 646 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 NSMCE2Q96MF7 247 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 LRFN5Q96NI6 719 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 TMEM121BQ9BXQ6 578 aaPredicted RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 TRIM4Q9C037 500 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 TGIF2Q9GZN2 237 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 EQTNQ9NQ60 294 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 NXT1Q9UKK6 140 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 CDV3Q9UKY7 258 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 B3GALT1Q9Y5Z6 326 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 SPTBN2O15020 2390 aa16.03■□□□□ 0.16
CCDC28B-202ENST00000421922 A0A087WV62 115 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 C5orf58C9J3I9 102 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 CXCR6O00574 342 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 ALBP02768 609 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 IFI6P09912 130 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 ZGLP1P0C6A0 271 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 NCK1P16333 377 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 ZNF28P17035 718 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 RPS26P62854 115 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 MS4A2Q01362 244 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 LASP1Q14847 261 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 NSDHLQ15738 373 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 VMACQ2NL98 169 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 COX20Q5RI15 118 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 GLYATQ6IB77 296 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 OR7G2Q8NG99 324 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 METTL21AQ8WXB1 218 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 ZNF578Q96N58 590 aaPredicted RBP16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 CNPPD1Q9BV87 410 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 EPS8L2Q9H6S3 715 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 ADAP2Q9NPF8 381 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 NECTIN3Q9NQS3 549 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 PNO1Q9NRX1 252 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 DLL3Q9NYJ7 618 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 MAT2BQ9NZL9 334 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 USP22Q9UPT9 525 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 ANGPT4Q9Y264 503 aa16.02■□□□□ 0.16
CCDC28B-202ENST00000421922 IGLV3-12A0A075B6K2 115 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ACOT8O14734 319 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ENTPD5O75356 428 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 STK17BO94768 372 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 HMGN2P05204 90 aaKnown RBP16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 CCNYL3P0C7X3 344 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 GGT1P19440 569 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 GALNSP34059 522 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ERFP50548 548 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 PGDP52209 483 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 POLE2P56282 527 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 RHAGQ02094 409 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 RBBP4Q09028 425 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ZNF630Q2M218 657 aaPredicted RBP16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 PRICKLE4Q2TBC4 344 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 MTX3Q5HYI7 312 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ATAD3BQ5T9A4 648 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 INTS11Q5TA45 600 aaKnown RBP16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ZNF385CQ66K41 422 aaPredicted RBP16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 LCN8Q6JVE9 175 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 FAM111BQ6SJ93 734 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 GPR155Q7Z3F1 870 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC30A8Q8IWU4 369 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ZZZ3Q8IYH5 903 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 OR2L13Q8N349 312 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 GALNT6Q8NCL4 622 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 TSLPQ969D9 159 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 PMEPA1Q969W9 287 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms