RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LHX9Q9NQ69 397 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 SDHBP21912 280 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 MAPK9P45984 424 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 TMED10P49755 219 aaKnown RBP12.65□□□□□ -0.38
VPS54-203ENST00000409558 RGS6P49758 472 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 CHRNEQ04844 493 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 SLC30A6Q6NXT4 461 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ACOT4Q8N9L9 421 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 OR52E4Q8NGH9 312 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ZFPM2Q8WW38 1151 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 GATAD2BQ8WXI9 593 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 FAM46AQ96IP4 442 aaKnown RBP12.65□□□□□ -0.38
VPS54-203ENST00000409558 CFHR5Q9BXR6 569 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ZFR2Q9UPR6 939 aaKnown RBP12.65□□□□□ -0.38
VPS54-203ENST00000409558 IGKV1-8A0A0C4DH67 115 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 A0A1W2PR48 441 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ADAM23O75077 832 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 LDB3O75112 727 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 CLEC2LP0C7M8 214 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ZNF12P17014 697 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 PPP2CBP62714 309 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 PPP2CAP67775 309 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 FADDQ13158 208 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 USP30Q70CQ3 517 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 UBE3DQ7Z6J8 389 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 EGFL6Q8IUX8 553 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 CADM3Q8N126 398 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ZNF607Q96SK3 696 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 GPA33Q99795 319 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 TSSK6Q9BXA6 273 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 SLIRPQ9GZT3 109 aaKnown RBP12.65□□□□□ -0.38
VPS54-203ENST00000409558 DPEP2Q9H4A9 486 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 SLC35C2Q9NQQ7 365 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 ARHGAP33O14559 1287 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 SEMG1P04279 462 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 GKN3PP0CG01 181 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 RHCEP18577 417 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 HYAL2Q12891 473 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 BCL7AQ4VC05 210 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 AGBL4Q5VU57 503 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 METRNLQ641Q3 311 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 RAB42Q8N4Z0 105 aa12.65□□□□□ -0.38
VPS54-203ENST00000409558 GPR55Q9Y2T6 319 aaPredicted RBP12.65□□□□□ -0.38
VPS54-203ENST00000409558 HELZP42694 1942 aaKnown RBP12.65□□□□□ -0.38
VPS54-203ENST00000409558 LRRC72A6NJI9 287 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 MYL12BO14950 172 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 KMOO15229 486 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 VEGFDO43915 354 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 FGF19O95750 216 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 SPNP16150 400 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TYRP1P17643 537 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 INSL4Q14641 139 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 GAB4Q2WGN9 574 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ZMAT1Q5H9K5 638 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ACSM5Q6NUN0 579 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ZNF730Q6ZMV8 503 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 AMER2Q8N7J2 671 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 CLIP3Q96DZ5 547 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 MAPKAP1Q9BPZ7 522 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 FAM83CQ9BQN1 747 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TBC1D17Q9HA65 648 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 MARK1Q9P0L2 795 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 SPIN1Q9Y657 262 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 PRKYO43930 277 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 SERPINB7O75635 380 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 MFN2O95140 757 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 APODP05090 189 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 HNRNPA1P09651 372 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS54-203ENST00000409558 JUNDP17535 347 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 CXCR2P25025 360 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ELAVL4P26378 380 aaKnown RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 MLIPQ5VWP3 458 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 SYT14Q8NB59 555 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TMIEQ8NEW7 156 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 OR2A1Q8NGT9 310 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 OR5P2Q8WZ92 322 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 CNRIP1Q96F85 164 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 FCRL1Q96LA6 429 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TM9SF2Q99805 663 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ZNF717Q9BY31 904 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 WDR12Q9GZL7 423 aaKnown RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 CLEC4AQ9UMR7 237 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TRIOBPQ9H2D6 2365 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 A0A1B0GVC2 190 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 A6NIN4 97 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 HOXC11O43248 304 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 RPN2P04844 631 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 CHRM4P08173 479 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 CD40LGP29965 261 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 GSTM5P46439 218 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ZNF311Q5JNZ3 666 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ATAT1Q5SQI0 421 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 C22orf42Q6IC83 251 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 LCTLQ6UWM7 567 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 IPCEF1Q8WWN9 437 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 HHIPQ96QV1 700 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 PLA2G12AQ9BZM1 189 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TBC1D29Q9UFV1 150 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ZC3H12DA2A288 527 aaKnown RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 NPIPB8E9PQR5 432 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms